View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15678_low_7 (Length: 369)
Name: NF15678_low_7
Description: NF15678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15678_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 17 - 355
Target Start/End: Complemental strand, 12051762 - 12051424
Alignment:
| Q |
17 |
atttctcatagacacggtgttgtaaatagtttgcggacatgaaaagaataagcatcaccaaccatgtcttgatcatagattccatctctaagaagaaaat |
116 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
12051762 |
atttctcatagacactgtgttgtaaatagtttgcggacatgaaaagaataagcatcaccaaccatgtcttgatcatagattccgtctctaagaagaaaat |
12051663 |
T |
|
| Q |
117 |
ctaatgaagctagtgaatgcagaataaccaaccaagaacaagatgaagacataagtagtaatgatggactacacgaataattgattttttggcaagttat |
216 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12051662 |
ctaatgaagctggtgaatccagaataaccaaccaagaacaagatgaagacataagtagtaatgatggactacacgaataattgattttttggcaagttat |
12051563 |
T |
|
| Q |
217 |
attacattattatacataatctattacataataattataatgagagagagtgctaacaagctaatttgaaaacaaaaagaaaatgatcaaggtttaaaga |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12051562 |
attacattattatacataatctattacataataattatattgagagagagtgctaacaagctaatttgaaaacaaaaagaaaatgatcaaggtttaaaga |
12051463 |
T |
|
| Q |
317 |
aaatttttactttttaaaccaacaccactgatccgtgcc |
355 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
12051462 |
aattttttactttttaaaccaacaccactgatccgtgcc |
12051424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 17 - 310
Target Start/End: Complemental strand, 12064644 - 12064340
Alignment:
| Q |
17 |
atttctcatagacacggtgttgtaaatagtttgcggacatgaaaagaataagcatcaccaaccatgtcttgatcatagattccatctctaagaagaaaat |
116 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
12064644 |
atttctcatagacac--tgttgtaaatagtttgcggacatgaaaagaataagcatcaccaaccatgtcttgatcatagattccgtctctaagaagaaaat |
12064547 |
T |
|
| Q |
117 |
ctaatgaagctagtgaatgcagaataaccaaccaagaacaagatgaaga-------cataagtagtaatgatggactacacgaataattgattttttggc |
209 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||| ||||||||||| | || |||||||| ||||||||| |
|
|
| T |
12064546 |
ataatgaagctagtgaatccagaataaccaaccaagaacaagacgaagacataactcataagtattaatgatggaccatacaaataattggttttttggc |
12064447 |
T |
|
| Q |
210 |
aagttatattacattattat-----acataatctattacataataattataatgagagagagtgctaacaagctaatttgaaaac-aaaaagaaaatgat |
303 |
Q |
| |
|
|||||| ||||||||||||| | ||||||| || |||||||||||| ||||| ||||||||||||||||||| ||||| | |||||||||||||| |
|
|
| T |
12064446 |
aagttacattacattattatctataatataatctttttcataataattatcctgagatagagtgctaacaagctaatatgaaatcaaaaaagaaaatgat |
12064347 |
T |
|
| Q |
304 |
caaggtt |
310 |
Q |
| |
|
||||||| |
|
|
| T |
12064346 |
caaggtt |
12064340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 26 - 286
Target Start/End: Complemental strand, 12059185 - 12058912
Alignment:
| Q |
26 |
agacacggtgttgtaaatagtttgcggacatgaaaagaataagcatcaccaaccatgtcttgatcatagattccatctctaagaagaaaatctaatgaag |
125 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
12059185 |
agacacagtgttgtaaatagtttgtggacatgaaaagaataagcatcaccaaccatgtcttgatcatagattccgtctctaagaagaaaatataatgaaa |
12059086 |
T |
|
| Q |
126 |
ctagtgaatgcagaataaccaaccaagaacaagatgaagacata-------agtagtaatgatggactacacgaataattgattttttggcaagttatat |
218 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||| |||||||| |||||| || |
|
|
| T |
12059085 |
ctagtgaatccagaataaccaaccaagaacaagatgaagacataactcatgagtattaatgatggaccacacgaataattggttttttggtaagttacat |
12058986 |
T |
|
| Q |
219 |
tacattattatacataatcta------ttacataataattataatgagagagagtgctaacaagctaatttgaa |
286 |
Q |
| |
|
||||||||||| ||||| || || |||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
12058985 |
tacattattatctataatataattttttttcataataattatcttgagatagagtgctaacaagctaatttgaa |
12058912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 40 - 128
Target Start/End: Original strand, 5573620 - 5573708
Alignment:
| Q |
40 |
aaatagtttgcggacatgaaaagaataagcatcaccaaccatgtcttgatcatagattccatctctaagaagaaaatctaatgaagcta |
128 |
Q |
| |
|
||||||||||| |||| ||||| |||||| | |||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5573620 |
aaatagtttgcagacaagaaaacaataagaaccaccaaccatgttttgattatagattccatctctaagaagaaagtctaatgaagcta |
5573708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 12047495 - 12047418
Alignment:
| Q |
19 |
ttctcatagacacggtgttgtaaatagtttgc-ggacatgaaaagaataagcatcaccaaccatgtcttgatcataga |
95 |
Q |
| |
|
||||||||||||| |||| ||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
12047495 |
ttctcatagacacagtgtcgtaaatagtttgcaggacatggaaagaataggcatcaccaaccatgtcttgatcataga |
12047418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 128
Target Start/End: Original strand, 5582895 - 5582983
Alignment:
| Q |
40 |
aaatagtttgcggacatgaaaagaataagcatcaccaaccatgtcttgatcatagattccatctctaagaagaaaatctaatgaagcta |
128 |
Q |
| |
|
||||||||||| |||| || ||||||| | | ||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5582895 |
aaatagtttgcagacaagagaagaataggaaacaccaaccatgtctttattatagaatccatctctaagaagaaaatctaatgaagcta |
5582983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 5593387 - 5593463
Alignment:
| Q |
40 |
aaatagtttgcggacatgaaaagaataagcatcaccaaccatgtcttgatcatagattccatctctaagaagaaaat |
116 |
Q |
| |
|
||||||||||| |||| || ||||||| | | ||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
5593387 |
aaatagtttgcagacaagagaagaataggaaacaccaaccatggctttatcatagattccatctctaagaagaaaat |
5593463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 5587128 - 5587240
Alignment:
| Q |
17 |
atttctcatagacacggtgttgtaaatagtttgcggacatgaaaagaataagcatcaccaaccatgtcttgatcatagattccatctctaagaagaaaat |
116 |
Q |
| |
|
||||| ||| ||||| ||||| ||||||||||| || | ||||| |||||| | ||||||||| ||||||| ||| ||||||| | |||| ||| ||| |
|
|
| T |
5587128 |
atttcccattgacacattgttgcaaatagtttgcagaaaagaaaacaataagaactaccaaccatttcttgattataaattccatatttaagcagacaat |
5587227 |
T |
|
| Q |
117 |
ctaatgaagctag |
129 |
Q |
| |
|
||||||||||||| |
|
|
| T |
5587228 |
ctaatgaagctag |
5587240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 12047318 - 12047264
Alignment:
| Q |
257 |
tgagagagagtgctaacaagctaatttgaaaacaaaa-agaaaatgatcaaggtt |
310 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
12047318 |
tgagatagagagctaacaagctaatttgaaaacaaaacagaaaataatcaaggtt |
12047264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 12070155 - 12070061
Alignment:
| Q |
17 |
atttctcatagacacggtgttgtaaatagtttgcggacatg--aaaagaataagcatcaccaaccatgtcttgatcatagattccatctctaagaa |
110 |
Q |
| |
|
||||| ||||| ||| ||||||||||||||||| |||||| |||||||||| |||||| |||||| |||||| |||||||| | ||||||||| |
|
|
| T |
12070155 |
atttcccataggcacaatgttgtaaatagtttgcagacatgaaaaaagaataa-catcacaaaccatatcttgaacatagatttcgactctaagaa |
12070061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University