View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15678_low_8 (Length: 344)
Name: NF15678_low_8
Description: NF15678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15678_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 15 - 329
Target Start/End: Complemental strand, 41310388 - 41310074
Alignment:
| Q |
15 |
cctgtgttaggtgctgcggtgtactgcagnnnnnnngctgccggtattctgtcagtttttctgttctctgctgagtttttgggggctcctttgcgggttc |
114 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41310388 |
cctgtgttgggtgctgcggtgtactgcagtttctttgctgccggtattctgtcagttttgctgttctctgctgagtttttgggggctcctttgcgggttc |
41310289 |
T |
|
| Q |
115 |
acacagcacctgctgtttttcctgtgctgctgtagccgtgcagctgctgagttgcaatagcagggcctgccgtgttggaattttctgttttgggtaggcc |
214 |
Q |
| |
|
| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41310288 |
aaacagcacctgctgtttttcatgtgctgctgtagccgtgcagctgctgagttgcaatagcagggcctgccgtgttggaattttctgttttgggtaggcc |
41310189 |
T |
|
| Q |
215 |
ttgttttagggtgccttttgggttatttgtttggggctgagggtctgtttgtgcctagtttgagctatggctgtgtaattcgatggccattgtaccggat |
314 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41310188 |
ttgttttagggtgccttttgggttctttgtttggggctgagggtctgtttgtgcctagtttgagctatggctgtgtaattcggtggccattgtaccggat |
41310089 |
T |
|
| Q |
315 |
tacaggctcataact |
329 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
41310088 |
tacaggctcataact |
41310074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 232 - 329
Target Start/End: Original strand, 31225676 - 31225773
Alignment:
| Q |
232 |
ttgggttatttgtttggggctgagggtctgtttgtgcctagtttgagctatggctgtgtaattcgatggccattgtaccggattacaggctcataact |
329 |
Q |
| |
|
||||||| | || ||||||||| |||| || |||||||||||||||||||||||||||||||| | |||| |||||| |||||||||||||||||||| |
|
|
| T |
31225676 |
ttgggttctgtgcttggggctgcgggtatgcttgtgcctagtttgagctatggctgtgtaattgggtggcgattgtatcggattacaggctcataact |
31225773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 31225532 - 31225590
Alignment:
| Q |
76 |
tgttctctgctgagtttttgggggctcctttgcgggttcacacagcacctgctgttttt |
134 |
Q |
| |
|
||||| |||||||||||||||||||| |||| ||||||| ||| ||| |||||||||| |
|
|
| T |
31225532 |
tgttcgctgctgagtttttgggggctattttgtgggttcaaacaacacttgctgttttt |
31225590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 329
Target Start/End: Original strand, 24189903 - 24189968
Alignment:
| Q |
264 |
tgtgcctagtttgagctatggctgtgtaattcgatggccattgtaccggattacaggctcataact |
329 |
Q |
| |
|
|||| |||||||||||||||||||||||||| | ||| ||| |||||||||||||| ||||||| |
|
|
| T |
24189903 |
tgtgactagtttgagctatggctgtgtaatttggtggtgatttgaccggattacaggcacataact |
24189968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University