View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15678_low_9 (Length: 315)
Name: NF15678_low_9
Description: NF15678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15678_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 15 - 306
Target Start/End: Original strand, 47714486 - 47714776
Alignment:
| Q |
15 |
agaatagactaactattttatgaatatctattttagcaatttacacattttcttttcgataaaaagactcatttaattacattttgtttgataatgactt |
114 |
Q |
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| T |
47714486 |
agaatagactaactattttatgaatatctattttagcaatttacacattttcttttcgataaaaagactcatttaattacattttgtttgataatgactt |
47714585 |
T |
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| Q |
115 |
gtccaaaattacaactctatttttcaattttgannnnnnnnnaaaagagtaaaattaagttttttgtccnnnnnnnggtgttggttgctaaaatactcct |
214 |
Q |
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| T |
47714586 |
gtccaaaattacaactctatttttcaattttga-ttttttttaaaagagtaaaattaagttttttgtccaaaaaaaggtgttggttgctaaaatactcct |
47714684 |
T |
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| Q |
215 |
ttatgaaaaagtatggttatatgtataaacatacacatgactatatccaaattcacaatgatccactatagcccagctgccctgccctttgc |
306 |
Q |
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| T |
47714685 |
ttatgaaaaagtatggttatatgtataaacatacacaggactatatccaaattcacaatgatccactatagcccagctgccctgccctttgc |
47714776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 47721844 - 47721974
Alignment:
| Q |
17 |
aatagactaactattttatgaatatctattttagcaatttacacattttcttttcgataaaaagactcatttaattacattttgtttgataatgacttgt |
116 |
Q |
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| T |
47721844 |
aatagactaactattttatgaaggtttattttagcaatttacacattttcttttggataaaaagacccatttaattacattttgtttgataatgccttgt |
47721943 |
T |
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| Q |
117 |
ccaaaattacaactctatttttcaattttga |
147 |
Q |
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| T |
47721944 |
cgaaaattacaactttatctttcaattttga |
47721974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 47728836 - 47728966
Alignment:
| Q |
17 |
aatagactaactattttatgaatatctattttagcaatttacacattttcttttcgataaaaagactcatttaattacattttgtttgataatgacttgt |
116 |
Q |
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|||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
47728836 |
aatagactaactattttatgaaggtttattttagcaatttacacattttcttttggataaaaagacccatttaattacattttgtttgataatgccttgt |
47728935 |
T |
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| Q |
117 |
ccaaaattacaactctatttttcaattttga |
147 |
Q |
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| T |
47728936 |
cgaaaattacaactttatctttcaattttga |
47728966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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