View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15679_high_1 (Length: 481)
Name: NF15679_high_1
Description: NF15679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15679_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 5 - 390
Target Start/End: Original strand, 8438919 - 8439292
Alignment:
| Q |
5 |
gacataggggcaaacccctatttattttatttctaagttttgtgcaggttgtttctatcttttacttagataatcgtttcaagccaatgatattgtaaat |
104 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8438919 |
gacataggggcaaacccctatttattgtatttctaagttttgtgcaggttgtttctatcttt-acttagataatcgtttcaagccaatgatattgtaaat |
8439017 |
T |
|
| Q |
105 |
aagcttaaggaattcacttctttcagctgggacccaatccattttaaaataattgtaaaagatgtgttaagtggtgattttatcactaataatagaaaag |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8439018 |
aagcttaaggaattcacttctttcagctgggacccaatccattttaaaataattgtaaaagatttgttcagtggtgattttatcactaataatagaaaag |
8439117 |
T |
|
| Q |
205 |
gaaaataatgatattgcattgatcaaattaaataccttcctcatagaagacccggacctttggttgcttcatgagctcatgacattgacatggtgtttga |
304 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8439118 |
gaaaataatgatattgcattgatc-----aaatacctttctcatagaagacccggacctttggttgcttcatgagctca------tgacatggtgtttga |
8439206 |
T |
|
| Q |
305 |
ttgcaaaccgatgaagtatgatatacgatgcaggatggaataagagttaaagaagaataagaatactactaaaggatttcaaacaa |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8439207 |
ttgcaaaccgatgaagtatgatatacgatgcaggatggaataagagttaaagaagaataagaatactactaaaggatttcaaacaa |
8439292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 387 - 462
Target Start/End: Original strand, 8439407 - 8439482
Alignment:
| Q |
387 |
acaattatgaaattgaattatattttcaacgaaatggaaaagagttaaatcaaaccacaatttaaaagcatctgtg |
462 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8439407 |
acaattatgaaattgaattatatcttcaacgaaatggaaaagagttaaatcaaaccacaatttaaaagcatctgtg |
8439482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 150 - 232
Target Start/End: Complemental strand, 31947416 - 31947332
Alignment:
| Q |
150 |
aaaataattgtaaaagatgtgttaagtggtgattttatcactaataata--gaaaaggaaaataatgatattgcattgatcaaat |
232 |
Q |
| |
|
||||| ||||| |||||| |||| | |||||||||| |||||||||||| ||||||||| ||||||||||||||||| |||| |
|
|
| T |
31947416 |
aaaatgattgtgaaagatatgttcaatggtgattttgtcactaataataatagaaaggaaaacaatgatattgcattgataaaat |
31947332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University