View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15679_high_11 (Length: 371)
Name: NF15679_high_11
Description: NF15679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15679_high_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 22 - 369
Target Start/End: Original strand, 17075396 - 17075743
Alignment:
| Q |
22 |
catcatcatggagtcgctggtgttatttcttcgacaagaaagaaggttaagaaagtggtgcggccttttgctaaatccagttcaatagttataaagagga |
121 |
Q |
| |
|
|||||| |||| | ||||||||||||||||||| |||| |||||||||||||||||||||||||| |||| |||||||| | || |||| ||| ||| |
|
|
| T |
17075396 |
catcataatggtgacgctggtgttatttcttcggcaaggaagaaggttaagaaagtggtgcggcccattgcacaatccagtaccatcgttaacaagcgga |
17075495 |
T |
|
| Q |
122 |
agaaagtgaatggaattttgcggcattcggtatttagtttgaagaaggtggcgcggttgcccagcaaagaccgggccgccgttttgcacattttaaaatc |
221 |
Q |
| |
|
|||||||||| ||||||||||| || ||||| ||||| |||| |||||||||||| |||| |||||||| || || | ||||| ||||| |||||||| |
|
|
| T |
17075496 |
agaaagtgaacggaattttgcgacactcggtgattagtctgaaaaaggtggcgcggctgcctagcaaagatcgttcctcagttttacacatcttaaaatc |
17075595 |
T |
|
| Q |
222 |
taaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagttcctcgtcggggtcggttaac |
321 |
Q |
| |
|
||||| ||||||||||||||| ||||| || |||||||||||||| | | |||||||||| ||| ||| ||||| ||||| || |||||||| |||||| |
|
|
| T |
17075596 |
taaattgagaaaattacaaggctcggaacgccttaaaaaggcggtaaaagtggtttcttcgggagcttcggatggtagttcgtcatcggggtccgttaac |
17075695 |
T |
|
| Q |
322 |
aatgattgggttaattgggtggcagtgcatgggaatgagaaggttgtg |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
17075696 |
aatgattgggttaattgggtggcagtgcatggaaatgagaaggttgtg |
17075743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 22 - 254
Target Start/End: Original strand, 11053470 - 11053702
Alignment:
| Q |
22 |
catcatcatggagtcgctggtgttatttcttcgacaagaaagaaggttaagaaagtggtgcggccttttgctaaatccagt-tcaatagttataaagagg |
120 |
Q |
| |
|
||||||||||| | ||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||| || || | | | || || |
|
|
| T |
11053470 |
catcatcatggtgacgctggtgttatttcatcggcaagaaagaaggttaagaaagtggtgcggcctattgcccaatccggtatctgt-gcaaacaatcgg |
11053568 |
T |
|
| Q |
121 |
aagaaagtgaatggaattttgcggcattcggtatttagtttgaagaaggtggcgcggttgcccagcaaagaccgggccgccgttttgcacattttaaaat |
220 |
Q |
| |
|
|||||||||||||| || ||||||| ||||| |||||||||| ||||||||||||||||| |||||||| ||| || || |||| || || ||||||| |
|
|
| T |
11053569 |
aagaaagtgaatggggttctgcggcactcggtgattagtttgaaaaaggtggcgcggttgcctagcaaagatcggtccaccattttacatatcttaaaat |
11053668 |
T |
|
| Q |
221 |
ctaaatcgagaaaattacaaggttcggatcgtct |
254 |
Q |
| |
|
|||||||||| |||||||||||||| || ||||| |
|
|
| T |
11053669 |
ctaaatcgaggaaattacaaggttcagaccgtct |
11053702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 250 - 362
Target Start/End: Original strand, 11064036 - 11064148
Alignment:
| Q |
250 |
cgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagttcctcgtcggggtcggttaacaatgattgggttaattgggtggcagtgc |
349 |
Q |
| |
|
||||||||||||| ||||| || |||||| ||| |||||| || || |||||||||||||| |||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
11064036 |
cgtcttaaaaaggtggttaaggtggtttcctcggaagtttcggaaggtagttcctcgtcgggatcggttaataatgattgggtcaattgggtggcagtgc |
11064135 |
T |
|
| Q |
350 |
atgggaatgagaa |
362 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
11064136 |
atgagaatgagaa |
11064148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 22 - 362
Target Start/End: Complemental strand, 17684263 - 17683923
Alignment:
| Q |
22 |
catcatcatggagtcgctggtgttatttcttcgacaagaaagaaggttaagaaagtggtgcggccttttgctaaatccagttcaatagttat--aaaga- |
118 |
Q |
| |
|
||||||||||| | ||||||||||||||| ||| ||||||||||||| | |||||||||||||||| || |||| | | ||| || | ||| | |
|
|
| T |
17684263 |
catcatcatggtgacgctggtgttatttcatcggcaagaaagaaggtcaggaaagtggtgcggcctattt-----tccaatccgatatttgtgcaaacaa |
17684169 |
T |
|
| Q |
119 |
--ggaagaaagtgaatggaattttgcggcattcggtatttagtttgaagaaggtggcgcggttgcccagcaaagaccgggccgccgttttgcacatttta |
216 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||| |||||||||| |||||||||| |||||| |||||||| ||| || ||||||| || || ||| |
|
|
| T |
17684168 |
acggaagaaagtgaatggggttttgcggcactcggtgattagtttgaaaaaggtggcgcagttgcctagcaaagatcggtccaccgttttacatatctta |
17684069 |
T |
|
| Q |
217 |
aaatctaaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagttcctcgtcggggtcgg |
316 |
Q |
| |
|
|||||||||||||| |||||||||||||| || ||||||||||||| ||| | || |||||| ||| ||||||| || || |||||||||||| |||||| |
|
|
| T |
17684068 |
aaatctaaatcgaggaaattacaaggttcagaccgtcttaaaaaggtggtaaaggtggtttcctcgggagtttcggaaggtagttcctcgtcgaggtcgg |
17683969 |
T |
|
| Q |
317 |
ttaacaatgattgggttaattgggtggcagtgcatgggaatgagaa |
362 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17683968 |
ttaataatgattgggttaattgggtggcagtgcatgggaatgagaa |
17683923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 202 - 365
Target Start/End: Complemental strand, 36160065 - 36159902
Alignment:
| Q |
202 |
gttttgcacattttaaaatctaaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagtt |
301 |
Q |
| |
|
|||||||||||| ||||||||||| | ||||||||||| || ||||||||||| ||||||||||| | || || |||||| ||| ||||||| |||| |
|
|
| T |
36160065 |
gttttgcacattctaaaatctaaagctagaaaattacatgggtcggatcgtctgaaaaaggcggtgaaggtggggtcttcgggagcttcagataaaagtt |
36159966 |
T |
|
| Q |
302 |
cctcgtcggggtcggttaacaatgattgggttaattgggtggcagtgcatgggaatgagaaggt |
365 |
Q |
| |
|
| || || | || |||||||| ||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
36159965 |
cttcttcatgttcagttaacaacgattgggttaattttgtggttgtgcatgggaatgagaaggt |
36159902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 7e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 115 - 368
Target Start/End: Original strand, 10559739 - 10559992
Alignment:
| Q |
115 |
aagaggaagaaagtgaatggaattttgcggcattcggtatttagtttgaagaaggtggcgcggttgcccagcaaagaccgggccgccgttttgcacattt |
214 |
Q |
| |
|
|||||||||||||||||||| || ||||||| ||||| |||||||||| ||||||| || | |||| |||||||| | || ||||||| ||||| | |
|
|
| T |
10559739 |
aagaggaagaaagtgaatgggtttctgcggcactcggtgattagtttgaaaaaggtggggcagctgcctagcaaagatcaatccaccgttttacacatct |
10559838 |
T |
|
| Q |
215 |
taaaatctaaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagttcctcgtcggggtc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||| ||||||||||| | || |||||||||| ||| ||||||||| ||||| || ||||| || |
|
|
| T |
10559839 |
taaaatctaaatcgagaaaattacaaggatcagatcgtctcaaaaaggcggtaaaggtggtttcttcgggagcttcagatggtagttcttcctcgggttc |
10559938 |
T |
|
| Q |
315 |
ggttaacaatgattgggttaattgggtggcagtgcatgggaatgagaaggttgt |
368 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10559939 |
agataacaatgattgggttaattgggtggcagtgcatgggaatgagaaggttgt |
10559992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 10558419 - 10558490
Alignment:
| Q |
21 |
acatcatcatggagtcgctggtgttatttcttcgacaagaaagaaggttaagaaagtggtgcggccttttgc |
92 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10558419 |
acatcatcatggtgacgctggtgttatttcttcggcaagaaagaaggttaagaaagtggtgcggcctattgc |
10558490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 22 - 369
Target Start/End: Complemental strand, 26741893 - 26741546
Alignment:
| Q |
22 |
catcatcatggagtcgctggtgttatttcttcgacaagaaagaaggttaagaaagtggtgcggccttttgctaaatccagttcaatagttataaagagga |
121 |
Q |
| |
|
||||||||||| | |||||||||||||| ||| | || ||||||||||||| ||||| || |||| ||||| |||| || | | |||| ||| ||| |
|
|
| T |
26741893 |
catcatcatggtgatgctggtgttatttcatcggctaggaagaaggttaagagagtggcgcagcctattgctcaatcatgtacctttgttaacaagcgga |
26741794 |
T |
|
| Q |
122 |
agaaagtgaatggaattttgcggcattcggtatttagtttgaagaaggtggcgcggttgcccagcaaagaccgggccgccgttttgcacattttaaaatc |
221 |
Q |
| |
|
|||||||||||| || || ||| | |||| |||||||||| ||||||| ||| ||||| ||||||| || || | ||||| ||||| |||||||| |
|
|
| T |
26741793 |
agaaagtgaatgagatcttacggaacccggtgattagtttgaaaaaggtggatcggctgccctgcaaagatcgttccacagttttacacatcttaaaatc |
26741694 |
T |
|
| Q |
222 |
taaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagttcctcgtcggggtcggttaac |
321 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||| ||||| || |||| |||||||||| ||| ||| ||||| ||||| || ||||| || |||||| |
|
|
| T |
26741693 |
taagtcgagaaaattacaaggatcggatcgtcttaagaaggctgtaagggtggtttcttcgggagcttcggatggtagttcttcctcgggttcagttaac |
26741594 |
T |
|
| Q |
322 |
aatgattgggttaattgggtggcagtgcatgggaatgagaaggttgtg |
369 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26741593 |
aacgattgggttaattgggtggaagtgcatgggaatgagaaggttgtg |
26741546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University