View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15679_high_15 (Length: 359)
Name: NF15679_high_15
Description: NF15679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15679_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 13447067 - 13447396
Alignment:
| Q |
1 |
agaggtaagctatcaggaatgcgaatcacagagtgctcgtctgcaaccattgagtcggagaaacctccataggcgatagtgccaccacgagacttaccat |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
13447067 |
agaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagacttaccat |
13447166 |
T |
|
| Q |
101 |
tgaatgtttgagtatatttggtgcagtaattctcaatgtcgtcggcacaattttcacaagaacgacatgaatcaaccatgtgtcccacccctactttgtc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
13447167 |
tgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcgcaagaacgacatgaatcaaccatgtatcccacccctactttgtc |
13447266 |
T |
|
| Q |
201 |
tccaactttaaacttttttactttgcttctcacctctgttactacacccgtaagttcgtgcctatatttattacattagttataaccaaattgagcaatt |
300 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
13447267 |
tccaactttaaacttttttactttgcttcccacctctgttactacacccgtaagttcgtgcctatatttattacattagttataacgaaattgagcaatt |
13447366 |
T |
|
| Q |
301 |
attttctactcgtttcttttgattgactca |
330 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
13447367 |
attttctactcgtttcttttgattgactca |
13447396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 13419516 - 13419833
Alignment:
| Q |
1 |
agaggtaagctatcaggaatgcgaatcacagagtgctcgtctgcaaccattgagtcggagaaacctccataggcgatagtgccaccacgagacttaccat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| | || |||||| ||||| |||| || |
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| T |
13419516 |
agaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccatatgtgacggtgccatcacgatactttgcac |
13419615 |
T |
|
| Q |
101 |
tgaatgtttgagtatatttggtgcagtaattctcaatgtcgtcggcacaattttcacaagaacgacatgaatcaaccatgtgtcccacccctactttgtc |
200 |
Q |
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|||| ||| || | | |||||||||||||| ||||| |||||||||| || |||||||||||||||||||||| |||||| || |||||||| |
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| T |
13419616 |
cacatgtgactgtaaatgttgggcagtaattctcaagatcgtcagcacaattttggcatgaacgacatgaatcaaccatgtatcccacaccaactttgtc |
13419715 |
T |
|
| Q |
201 |
tccaactttaaacttttttactttgcttctcacctctgttactacacccgtaagttcgtgcctatatttattacattagttataaccaaattgagcaatt |
300 |
Q |
| |
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||||||||||||||||| ||||||||||| ||||| ||||||| ||||| |||||| ||||| |||||||| || | |||||| |||||||| ||||| |
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| T |
13419716 |
tccaactttaaacttttctactttgcttccaacctcggttactatacccgcaagttcatgcctgcatttattaaataaattataaacaaattgaacaatt |
13419815 |
T |
|
| Q |
301 |
attttctactcgtttctt |
318 |
Q |
| |
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|||| |||||| |||||| |
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| T |
13419816 |
atttactactcatttctt |
13419833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 13426407 - 13426669
Alignment:
| Q |
1 |
agaggtaagctatcaggaatgcgaatcacagagtgctcgtctgcaaccattgagtcggagaaacctccataggcgatagtgccaccacgagacttaccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||| | || ||||| ||||| ||||| || |
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| T |
13426407 |
agaggtaagctatcaggaatgcgaatcacaaagtgctcatctgcaaccattgagtcggaataacctccatatgtgacgctgccatcacgatacttagcac |
13426506 |
T |
|
| Q |
101 |
tgaatgtttgagtatatttggtgcagtaattctcaatgtcgtcggcacaattttcacaagaacgacatgaatcaaccatgtgtcccacccctactttgtc |
200 |
Q |
| |
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|||| || | || || |||||||||||||| || || ||||||||||| || |||||||||||||||||||||| |||||| ||||||||||| |
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| T |
13426507 |
cacatgtaactgtttgttgggggcagtaattctcaagatcttccgcacaattttcgcatgaacgacatgaatcaaccatgtatcccactcctactttgtc |
13426606 |
T |
|
| Q |
201 |
tccaactttaaacttttttactttgcttctcacctctgttactacacccgtaagttcgtgcct |
263 |
Q |
| |
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||||||||||||||||| ||||||||||| ||||||||||| | ||||| |||||| ||||| |
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| T |
13426607 |
tccaactttaaacttttctactttgcttccaacctctgttacaatacccgcaagttcatgcct |
13426669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 13 - 275
Target Start/End: Original strand, 13413183 - 13413445
Alignment:
| Q |
13 |
tcaggaatgcgaatcacagagtgctcgtctgcaaccattgagtcggagaaacctccataggcgatagtgccaccacgagacttaccattgaatgtttgag |
112 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| | || || ||| ||||| |||| || |||| |
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| T |
13413183 |
tcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccataagtgacggttccatcacgatacttggcaccacatgtgacta |
13413282 |
T |
|
| Q |
113 |
tatatttggtgcagtaattctcaatgtcgtcggcacaattttcacaagaacgacatgaatcaaccatgtgtcccacccctactttgtctccaactttaaa |
212 |
Q |
| |
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| |||||| |||||||||||||| | ||| ||||| || || || ||||||||||||| || || || || ||||||||||||||||||||||| |
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| T |
13413283 |
caaatttggggcagtaattctcaagattgtcattacaatcttggcatgatcgacatgaatcaatcaagtagccaacacctactttgtctccaactttaaa |
13413382 |
T |
|
| Q |
213 |
cttttttactttgcttctcacctctgttactacacccgtaagttcgtgcctatatttattaca |
275 |
Q |
| |
|
||| | |||||||||| || |||||||||| ||||| ||| || ||||| ||||||||||| |
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| T |
13413383 |
cttctccactttgcttcctacttctgttactatacccgcaagctcatgcctgtatttattaca |
13413445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 146 - 244
Target Start/End: Complemental strand, 13389086 - 13388988
Alignment:
| Q |
146 |
cacaattttcacaagaacgacatgaatcaaccatgtgtcccacccctactttgtctccaactttaaacttttttactttgcttctcacctctgttacta |
244 |
Q |
| |
|
||||||||| ||| || ||||||||||||||||||| || || ||||||||||||||||| || ||||||| ||||||||||| ||||| ||| |||| |
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| T |
13389086 |
cacaattttgacatgatcgacatgaatcaaccatgtagccaacacctactttgtctccaacattgaacttttctactttgcttcccacctttgtcacta |
13388988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 146 - 244
Target Start/End: Complemental strand, 13385265 - 13385167
Alignment:
| Q |
146 |
cacaattttcacaagaacgacatgaatcaaccatgtgtcccacccctactttgtctccaactttaaacttttttactttgcttctcacctctgttacta |
244 |
Q |
| |
|
||||||||| ||| || ||||||||||||| |||| || || ||||||||||||||||| || ||||||| ||||||||||| ||||| ||| |||| |
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|
| T |
13385265 |
cacaattttgacacgatcgacatgaatcaattatgtagccaacacctactttgtctccaacattgaacttttctactttgcttcccacctttgtcacta |
13385167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 146 - 244
Target Start/End: Original strand, 13454165 - 13454263
Alignment:
| Q |
146 |
cacaattttcacaagaacgacatgaatcaaccatgtgtcccacccctactttgtctccaactttaaacttttttactttgcttctcacctctgttacta |
244 |
Q |
| |
|
||||||||| ||| || |||| |||||||||| | |||||| |||||| ||||||||||||| |||||||| |||||||||| ||| ||||| |||| |
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| T |
13454165 |
cacaattttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttttcactttgcttcccacttctgtaacta |
13454263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 13454035 - 13454089
Alignment:
| Q |
16 |
ggaatgcgaatcacagagtgctcgtctgcaaccattgagtcggagaaacctccat |
70 |
Q |
| |
|
|||||||||| |||| |||||||||| | |||||||||||| ||||| ||||||| |
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|
| T |
13454035 |
ggaatgcgaaacacaaagtgctcgtcggaaaccattgagtcagagaagcctccat |
13454089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 47601353 - 47601405
Alignment:
| Q |
16 |
ggaatgcgaatcacagagtgctcgtctgcaaccattgagtcggagaaacctcc |
68 |
Q |
| |
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|||||| ||| |||| ||||||||||| ||||||||||||| ||| ||||||| |
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| T |
47601353 |
ggaatgtgaaccacaaagtgctcgtctacaaccattgagtcagagtaacctcc |
47601405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 47601530 - 47601566
Alignment:
| Q |
193 |
actttgtctccaactttaaacttttttactttgcttc |
229 |
Q |
| |
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||||||||||||||||| ||||||| ||||||||||| |
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| T |
47601530 |
actttgtctccaactttgaacttttctactttgcttc |
47601566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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