View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15679_high_22 (Length: 335)
Name: NF15679_high_22
Description: NF15679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15679_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 43802426 - 43802099
Alignment:
| Q |
1 |
agtggtcccggagggtataatcttaaggtctccatgatcacaatatccaagtaacttaactttgacaaatcattttcttctactaatttcttcgccccaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43802426 |
agtggtcccggagggtataatcttaaggtctccatgatcacaatatccaagtaacttaactttgacaaatcattttcttctactaatttgttcgccccaa |
43802327 |
T |
|
| Q |
101 |
ccacgttatctagctcttgttggagatttttcatcactcttggatgcctcatgagctctgataaagcccactccacaactgttacggaagtttcaaatgc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
43802326 |
ccacgttatctagctcttgttggagatttttcatcactcttggatgcctcatgagctctgataaagcccactccacaaccgttgcggaagtttcaaatgc |
43802227 |
T |
|
| Q |
201 |
cccggcaatcatgtctagggatatagcctttatgtttgttcgatcaacgacatgggttttttcgtcagagagatcgatcggttggtgcatcagtgagagt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
43802226 |
cccggcaatcatgtctagggatatagcctttatgtttgttcgatcaacgacatgggttttttcgtcagagggatcgatcggttggtgcatcagtgagagt |
43802127 |
T |
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| Q |
301 |
agaatgtctacgaaatccctatgcttct |
328 |
Q |
| |
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|||||||||||||| ||| ||||||||| |
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| T |
43802126 |
agaatgtctacgaagtccttatgcttct |
43802099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 43812995 - 43812686
Alignment:
| Q |
1 |
agtggtcccggagggtataatcttaaggtctccatgatcacaatatccaagtaacttaactttgacaaatcattttcttctactaatttcttcgccccaa |
100 |
Q |
| |
|
|||||||| | ||| |||||||||||||||||||||||||||||||| |||||||||||||||| || |||||| || || |||||||| ||| ||||| |
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| T |
43812995 |
agtggtcctgcaggatataatcttaaggtctccatgatcacaatatctaagtaacttaactttgccatatcattctcctccactaatttgttcatcccaa |
43812896 |
T |
|
| Q |
101 |
ccacgttatctagctcttgttggagatttttcatcactcttggatgcctcatgagctctgataaagcccactccacaactgttacggaagtttcaaatgc |
200 |
Q |
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| || |||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| | ||||| |||||||| |
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| T |
43812895 |
ctacactatccagctcttgttggagatttttcattactcttggatgcctcatgagctcggataaagcccactccacaatggttgcagaagtgtcaaatgc |
43812796 |
T |
|
| Q |
201 |
cccggcaatcatgtctagggatatagcctttatgtttgttcgatcaacgacatgggttttttcgtcagagagatcgatcggttggtgcatcagtgagagt |
300 |
Q |
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| |||| |||||||||| || |||||||||||||||||||||||||| ||||||| ||| |||||||||| |||| |||| |||||| ||||||||||| |
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| T |
43812795 |
cgcggcgatcatgtctaaggctatagcctttatgtttgttcgatcaatgacatggctttgttcgtcagagggatcaatcgtctggtgcgtcagtgagagt |
43812696 |
T |
|
| Q |
301 |
agaatgtcta |
310 |
Q |
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|||||||||| |
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| T |
43812695 |
agaatgtcta |
43812686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 29944776 - 29944727
Alignment:
| Q |
124 |
agatttttcatcactcttggatgcctcatgagctctgataaagcccactc |
173 |
Q |
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|||||||||||||||||||||||||| | || || |||||||||||||| |
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|
| T |
29944776 |
agatttttcatcactcttggatgccttaaaagttcggataaagcccactc |
29944727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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