View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15679_high_23 (Length: 333)
Name: NF15679_high_23
Description: NF15679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15679_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 4749162 - 4748859
Alignment:
| Q |
1 |
ctcgaagcaaatcaatgtacaaatgctcaaccaaagcaaggtcagcatgttcacgatcagaggaaaagaaaacagaagtgatgacatcaaaagtgaactt |
100 |
Q |
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| T |
4749162 |
ctcgaagcaaatcaatgtacaaatgctcaaccaaagcaaggtcagcatgttcacgatcagaggaaaagaagacagaagtgatgacatcaaaagtgaactt |
4749063 |
T |
|
| Q |
101 |
tttggtctctttgagaaactcaaccggtgtgttcgttttagacgaatcttctaaatttttcactacaatatcttctatgagaccaatataattgtacaat |
200 |
Q |
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| T |
4749062 |
tttggcctctttgagaaactcaaccggtgtgttcgttttagacgaatcttctaaatttttcactacaatatcttctatgagaccaatataattgtacaat |
4748963 |
T |
|
| Q |
201 |
tcgtgaccatttattggagacgtggttacctttcgcaaacgtttatgctcggcacttgatattccatggaatgattttttccctgcaagtgccatagctg |
300 |
Q |
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| T |
4748962 |
tcgtgaccatttattggagacgtggttacctttcgcaaacgtttatgctcggcacttgatattccatggaatgattttttccctgcaagtgccatagctg |
4748863 |
T |
|
| Q |
301 |
aagc |
304 |
Q |
| |
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|||| |
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| T |
4748862 |
aagc |
4748859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 285
Target Start/End: Complemental strand, 4756996 - 4756713
Alignment:
| Q |
5 |
aagcaaatcaatgtacaaatgctcaaccaaagcaaggtcagcatgttcacgatcagaggaaaagaaaacagaagtgatgacatcaaaagtgaactttttg |
104 |
Q |
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|||||||||||||||||||| ||||||||| ||||||| | || ||||||||||| |||| ||| | | ||||||||| ||||||| |||||| | |
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| T |
4756996 |
aagcaaatcaatgtacaaattttcaaccaaaccaaggtccacgtgatcacgatcagaagaaatgaagatggtagtgatgacttcaaaagcaaactttctc |
4756897 |
T |
|
| Q |
105 |
gtctctttgagaaactcaaccggtgtgttcgttttagacgaatcttctaaatttttcactacaatatcttctatgagaccaatataattgtacaa---tt |
201 |
Q |
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||||||| ||||||||| ||||||||| |||||||| | |||||||||| |||||| || |||| || ||||||| ||||||| | |||| || |
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| T |
4756896 |
atctctttaagaaactcacatggtgtgttcattttagacaactcttctaaatgtttcacagcactatcctcaatgagactaatataagttgacaatgctt |
4756797 |
T |
|
| Q |
202 |
cgtgaccatttattggagacgtggttacctttcgcaaacgtttatgctcggcacttgatattccatggaatgattttttccctg |
285 |
Q |
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||| ||||||||| ||||| ||| ||| || ||||||||| || || | | |||| ||||||||||||||| |||| |||| |
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| T |
4756796 |
cgtcaccatttatgggagaagtgattaaacgtctcaaacgtttgtgttcagaatttgagattccatggaatgatcttttacctg |
4756713 |
T |
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