View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15679_high_3 (Length: 484)
Name: NF15679_high_3
Description: NF15679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15679_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 52 - 392
Target Start/End: Complemental strand, 4986154 - 4985817
Alignment:
| Q |
52 |
tgacacaagaatttagagctaataagagcaacaaataacg-tgagcttacaatgagatggacatcatcatcatgcaaaaatatggtaagacacactaacc |
150 |
Q |
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| T |
4986154 |
tgacacaagaatttagagctaataagagcaacaaataacaatgtg-ttaaaatggg---gacattaacatcatgcaaaaatatggtaagacacactaacc |
4986059 |
T |
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| Q |
151 |
ttaaaaatgagactgttannnnnnnaaaccttttttatgacataacagttgccataatctcaaggaatctcacctacaaagttcattgtcaacagttagg |
250 |
Q |
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| T |
4986058 |
ttaaaaatgagactgttatttttttaaaccttttttatgacataacagttgccataatctcaaggaatctcaccgacaaagttcattgtcaacagttagg |
4985959 |
T |
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| Q |
251 |
tttgaaatttgattgagactttggagctcaaaattttcaactgtcggcaagtagtgtcctatatttacattaaaattacaagagtttgtgccgcaattta |
350 |
Q |
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| T |
4985958 |
tttgaaatttgattgagactttggagctcaaaattttctactttcggcaagtagtgtcctatatttacattaaaattacaagagtttgtgccgcaattta |
4985859 |
T |
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| Q |
351 |
aacaaattttgatacacaatcaagaataaaatatcttctcag |
392 |
Q |
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| T |
4985858 |
aacaaattttgatatacaatcaagaataaaatatcttctcag |
4985817 |
T |
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