View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15679_high_4 (Length: 473)
Name: NF15679_high_4
Description: NF15679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15679_high_4 |
 | |
|
| [»] scaffold0078 (3 HSPs) |
| | |
|
| [»] scaffold0184 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 24 - 444
Target Start/End: Complemental strand, 1963325 - 1962905
Alignment:
| Q |
24 |
tcatcaatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactcaaact |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
1963325 |
tcatcaatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacattgtttgtccaaccatgtcagacactcaaact |
1963226 |
T |
|
| Q |
124 |
tattagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctatagg |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1963225 |
tattagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcatctgtcattgcttctatagg |
1963126 |
T |
|
| Q |
224 |
acccttttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatcta |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1963125 |
acccttttcaatttccaggaagctattaataagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatcta |
1963026 |
T |
|
| Q |
324 |
tcttgagctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttat |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1963025 |
tcttgagctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttat |
1962926 |
T |
|
| Q |
424 |
ccaacttgagcaaatggaagt |
444 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
1962925 |
ccaacttgagcaaatggaagt |
1962905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 24 - 444
Target Start/End: Original strand, 2015104 - 2015524
Alignment:
| Q |
24 |
tcatcaatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactcaaact |
123 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||| || ||||| ||||||| |||||||||||| |||||||||||||||||| |||||| ||||||| |
|
|
| T |
2015104 |
tcattaatttgttcttgcgaaagtgttccaccactcccgaaagacacatacagaactgaacaaggccgttgtttgtccaaccatgccagacattcaaact |
2015203 |
T |
|
| Q |
124 |
tattagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctatagg |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2015204 |
tattagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcagtgcttctatagg |
2015303 |
T |
|
| Q |
224 |
acccttttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatcta |
323 |
Q |
| |
|
||| ||||| ||||| | ||| |||||||| |||| ||||||||||||||| ||||||||||||| |||||| ||| | |||||||||||||| |||||| |
|
|
| T |
2015304 |
accgttttcgatttctatgaaactattaataagaataccatcaaaaagacgcaatttttcaacaccttggagtaagtatttgtaagattgactggatcta |
2015403 |
T |
|
| Q |
324 |
tcttgagctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttat |
423 |
Q |
| |
|
||||||||||| |||| || |||||||||||||||||| |||| ||||||||||||||||||| | ||||||||||||||||| ||||| |||||||||| |
|
|
| T |
2015404 |
tcttgagctagctcaaaaagatcccgaccatgaatcggaacactacctggtatttgaataggcccaggaagatctctgtactcgcatgatgtttccttat |
2015503 |
T |
|
| Q |
424 |
ccaacttgagcaaatggaagt |
444 |
Q |
| |
|
| ||||||||||||| ||||| |
|
|
| T |
2015504 |
ctaacttgagcaaatagaagt |
2015524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 24 - 444
Target Start/End: Original strand, 2018487 - 2018907
Alignment:
| Q |
24 |
tcatcaatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactcaaact |
123 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||| |||||||| ||| |
|
|
| T |
2018487 |
tcattaatttgttcttgcgaaagtgtgccaccactcccaaaagaaacatacaaaactgaacaagtttgctgtttgtccaaccatgccagacacttcaacc |
2018586 |
T |
|
| Q |
124 |
tattagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctatagg |
223 |
Q |
| |
|
|||| |||||||||| ||| | ||| | ||||||||||| |||||||||||||| ||| | |||| |||||| || ||||| | |||||||||||| |
|
|
| T |
2018587 |
cattatcatcatcacccgatttggttggcgtttggataattggtccaacagcataaacatcagggttgccacttctgtcttctgtgagtgcttctatagg |
2018686 |
T |
|
| Q |
224 |
acccttttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatcta |
323 |
Q |
| |
|
||| ||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||| || || ||||| ||||||||||||||||||||| |
|
|
| T |
2018687 |
acctttttcaatttctaggaagctattaataagaataccatcaaaaagacggaatttttcaacacgttcaagtaagaatttgtaagattgacttgatcta |
2018786 |
T |
|
| Q |
324 |
tcttgagctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttat |
423 |
Q |
| |
|
||||||||| |||||| || |||| |||||||||| || ||||| ||||||||||||||||||||| |||||||| |||||| |||||| |||||||||| |
|
|
| T |
2018787 |
tcttgagcttggtcaacaagatcctgaccatgaattggtacacagcctggtatttgaataggctctagaagatctttgtactgacatgatgtttccttat |
2018886 |
T |
|
| Q |
424 |
ccaacttgagcaaatggaagt |
444 |
Q |
| |
|
|||||||||||||| ||||| |
|
|
| T |
2018887 |
tcaacttgagcaaatagaagt |
2018907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 28 - 443
Target Start/End: Original strand, 2011709 - 2012124
Alignment:
| Q |
28 |
caatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactcaaacttatt |
127 |
Q |
| |
|
|||||||||| || |||||||| ||||||||||| ||||| ||||||||||||||||||| |||||||||| |||||| ||||||||| || ||| |
|
|
| T |
2011709 |
caatttgttcgtgtgaaagtgtaccaccactaccgaaagacacatacaaaactgaacaagattgttgtttgtctaaccatgacagacactccaaaccatt |
2011808 |
T |
|
| Q |
128 |
agcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccc |
227 |
Q |
| |
|
|||||||||| |||| ||||| ||| ||||| ||||||||||||| ||| ||| | |||| |||||||||| ||||||| ||| | |||||| ||| |
|
|
| T |
2011809 |
agcatcatcaacagaacctgttactgtctggatgatgggtccaacaggatagacagaagggttgccacttccttcctctgtcaatgcatttataggtccc |
2011908 |
T |
|
| Q |
228 |
ttttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatctt |
327 |
Q |
| |
|
|||| ||||| | ||||||||||| |||||||||||| || || || ||| |||| ||| || ||| | ||||||| ||||||||||||||||| |
|
|
| T |
2011909 |
atttccatttctaagaagctattaacaagaacaccatcagcaaaacttaaacttttaacatgttgaaggaagtatttgtaagcttgacttgatctatctt |
2012008 |
T |
|
| Q |
328 |
gagcta-ggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatcca |
426 |
Q |
| |
|
|| ||| ||||||| | ||||| ||||| | || || || || |||| || ||||||||||| ||||||||||||||||||| ||||||| ||||| |
|
|
| T |
2012009 |
gaactatggtcaag-agatccctgccatggagtggtacgcagcccggtactttgataggctctgggagatctctgtactcacatgttgtttcctcatcca |
2012107 |
T |
|
| Q |
427 |
acttgagcaaatggaag |
443 |
Q |
| |
|
|||| |||||| |||| |
|
|
| T |
2012108 |
acttaggcaaatagaag |
2012124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 28 - 443
Target Start/End: Original strand, 2008094 - 2008509
Alignment:
| Q |
28 |
caatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactcaaacttatt |
127 |
Q |
| |
|
||||||| || || |||||||| || ||||| |||||||| ||||||||||| |||||||| | ||||| |||||||| ||||||||| || ||| |
|
|
| T |
2008094 |
caatttgctcctgtgaaagtgtacctccactcccaaaagatacatacaaaaccgaacaaggttgctgtttatccaaccaggccagacactccaagccatt |
2008193 |
T |
|
| Q |
128 |
agcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccc |
227 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||||| |||||||||| |||||| || |||| |||| ||| || ||| ||||||| || ||||||| |
|
|
| T |
2008194 |
agcatcatcaccagattttgtttctgtttcgataataggtccaacaggatacactggagggttgtcacctccctcctctttcattgcacttagaggaccc |
2008293 |
T |
|
| Q |
228 |
ttttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatctt |
327 |
Q |
| |
|
| || ||||| ||||||||||||| |||||||||||| | || || || |||| || |||| ||| ||||||| ||||||||||||||||| |
|
|
| T |
2008294 |
atctctatttctaggaagctattaacaagaacaccatcagcagaacttaaaagtttaacaaatgggaggaagtgtttgtaagcttgacttgatctatctt |
2008393 |
T |
|
| Q |
328 |
gagcta-ggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatcca |
426 |
Q |
| |
|
|||||| | ||||| ||||||| ||||| | || |||||||||||||||| ||||||||| | | |||||| ||||||||||| ||||||| ||||| |
|
|
| T |
2008394 |
gagctatgctcaag-aaatccctgccatggagtggtacacaacctggtatttttataggctctagtatatctctatactcacatgatgtttcctcatcca |
2008492 |
T |
|
| Q |
427 |
acttgagcaaatggaag |
443 |
Q |
| |
|
||| |||||| |||| |
|
|
| T |
2008493 |
gcttaggcaaatagaag |
2008509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 99 - 287
Target Start/End: Complemental strand, 2433139 - 2432951
Alignment:
| Q |
99 |
tccaaccatatcagacactcaaacttattagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttc |
198 |
Q |
| |
|
||||||||| ||||||||| ||| ||||||||||||| |||| |||||| ||| ||||| ||||||||||||| |||||||||| | |||||||||| |
|
|
| T |
2433139 |
tccaaccatgacagacactccaacatattagcatcatcgtcagaacttgttattgtctggatgatgggtccaacaggatacacaagaggattttcacttc |
2433040 |
T |
|
| Q |
199 |
cttcgtctgtcattgcttctataggacccttttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaaca |
287 |
Q |
| |
|
|||| ||||||| ||||| |||||||||| |||| ||||| | ||||||||||| ||||||||||||| || |||| |||||| |||| |
|
|
| T |
2433039 |
cttcatctgtcagtgcttttataggacccctttccatttctaagaagctattaacaagaacaccatcaacaaaacggtattttttaaca |
2432951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 28 - 426
Target Start/End: Complemental strand, 1968921 - 1968523
Alignment:
| Q |
28 |
caatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactcaaacttatt |
127 |
Q |
| |
|
|||||||||| || |||||||| |||||||| || ||||| |||||||||||||| ||||| | ||||| |||||||| ||||||||| || ||| |
|
|
| T |
1968921 |
caatttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaaggctgctgtttatccaaccaggccagacactccaagccatt |
1968822 |
T |
|
| Q |
128 |
agcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccc |
227 |
Q |
| |
|
|||||||||||| || ||||| |||||||||||| |||||||||| |||||| || |||| |||||||| || ||| ||||||| |||||| ||| |
|
|
| T |
1968821 |
agcatcatcacctgaacttgtttctgtttggataattggtccaacaggatacactggagggttgtcacttccctcctctttcattgcacttataggtccc |
1968722 |
T |
|
| Q |
228 |
ttttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatctt |
327 |
Q |
| |
|
| || | ||||||||||||||||| | |||||||||| || || || || || | | |||| ||| |||||| ||||||||||||||||| |
|
|
| T |
1968721 |
atctccaattccaggaagctattaacaaaaacaccatcagcaaaacttaaaagtttaaaaagtgggaggaagtgtttgtaaacttgacttgatctatctt |
1968622 |
T |
|
| Q |
328 |
gagcta-ggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatcca |
426 |
Q |
| |
|
|||||| | ||||| | ||||| ||||| || || ||||| |||||||||| ||||||||||| | |||||| ||||||||||| ||||||| ||||| |
|
|
| T |
1968621 |
gagctacgctcaag-agatccctgccatggattggtacacagcctggtatttttataggctctggtatatctctatactcacatgatgtttcctcatcca |
1968523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 28 - 266
Target Start/End: Original strand, 2004714 - 2004952
Alignment:
| Q |
28 |
caatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactcaaacttatt |
127 |
Q |
| |
|
||||||||||||| |||||||| || ||||| |||||||| |||||||||||||||||||| | ||||| ||||||||| | ||||| || ||| || |
|
|
| T |
2004714 |
caatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaactgaacaaggttgctgtttatccaaccatgttagacattccaacccatg |
2004813 |
T |
|
| Q |
128 |
agcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccc |
227 |
Q |
| |
|
| | ||||||| || || || || |||| ||||||||||||| ||||||| || |||||||||||||||| ||| ||||||| |||||||||| |
|
|
| T |
2004814 |
attagcatcaccggaactttctatcgtcgggatgatgggtccaacaggatacacaggagggttttcacttccttcatctttcattgcacttataggaccc |
2004913 |
T |
|
| Q |
228 |
ttttcaatttccaggaagctattaattagaacaccatca |
266 |
Q |
| |
|
| || ||||| ||||||||||||| |||||||||||| |
|
|
| T |
2004914 |
atctccatttctaggaagctattaacaagaacaccatca |
2004952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 28 - 266
Target Start/End: Complemental strand, 1964985 - 1964747
Alignment:
| Q |
28 |
caatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactcaaacttatt |
127 |
Q |
| |
|
|||||||||| || |||||||| |||||||| || ||||| ||||||||||||||||||| |||||||||| |||||| ||||||||| || ||| |
|
|
| T |
1964985 |
caatttgttcgtgtgaaagtgtaccaccactcccgaaagacacatacaaaactgaacaagattgttgtttgtctaaccatgacagacactccaaaccatt |
1964886 |
T |
|
| Q |
128 |
agcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccc |
227 |
Q |
| |
|
||||||| |||| ||||| ||| | ||| ||||||||||||| ||||||| | |||| |||||||||| |||||| ||||| |||||| ||| |
|
|
| T |
1964885 |
agcatcacggtcagaacatgttactgtatcgatgatgggtccaacaggatacacagaagggttgccacttccttcctctgtcggtgcttttataggtccc |
1964786 |
T |
|
| Q |
228 |
ttttcaatttccaggaagctattaattagaacaccatca |
266 |
Q |
| |
|
|||| ||||| | ||||||||||| |||||||||||| |
|
|
| T |
1964785 |
atttccatttctaagaagctattaacaagaacaccatca |
1964747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 443
Target Start/End: Original strand, 2004989 - 2005129
Alignment:
| Q |
303 |
ttgtaagattgacttgatctatcttgagctagg-tcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctg |
401 |
Q |
| |
|
||||||| ||||||||| |||||||||| | || ||| || | |||| ||||| || || |||||||||||||||| |||||| |||| | ||||| |
|
|
| T |
2004989 |
ttgtaagcttgacttgacctatcttgagttgggctcatgaga-tccctgccatggattggtacacaacctggtatttttataggcactggtatatctcca |
2005087 |
T |
|
| Q |
402 |
tactcacatgaagtttccttatccaacttgagcaaatggaag |
443 |
Q |
| |
|
||||||||||| ||||| | ||||||||| |||||| |||| |
|
|
| T |
2005088 |
tactcacatgatgtttcttcatccaacttaggcaaatagaag |
2005129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 158; Significance: 7e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 24 - 444
Target Start/End: Complemental strand, 5902498 - 5902084
Alignment:
| Q |
24 |
tcatcaatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactcaaact |
123 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||| ||||||| | |||||| |||||||||| | |
|
|
| T |
5902498 |
tcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacatacaaaactgaacaaggttgttgtttatgtaaccatgtcagacactcca--- |
5902402 |
T |
|
| Q |
124 |
tattagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctatagg |
223 |
Q |
| |
|
|| ||| || ||||||| |||| |||||||||||||||||||| || |||||| | |||| |||||||||| ||||||| |||||||||||| |
|
|
| T |
5902401 |
---taccattattaccagattctgttcttgtttggataatgggtccaatagggtacacagcagggttaccacttccttcttctgtcagtgcttctatagg |
5902305 |
T |
|
| Q |
224 |
acccttttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatcta |
323 |
Q |
| |
|
||| |||||||||||||||||||||||||| || | ||||||| | || |||| ||| || || |||||| ||||| ||||||||||| || |||||| |
|
|
| T |
5902304 |
acctttttcaatttccaggaagctattaataagtatgccatcaacagaacagaatcttttaatacgttggagtaagaatttgtaagattggctcgatcta |
5902205 |
T |
|
| Q |
324 |
tcttgagctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttat |
423 |
Q |
| |
|
||||||||| || ||| | |||||||||| |||| || |||||||||||| ||||||||| ||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
5902204 |
tcttgagcttgggcaacgagatcccgaccacgaattggtacacaacctggtgcttgaataggttctggcagatctctgtactcacatgatgtttccttat |
5902105 |
T |
|
| Q |
424 |
ccaacttgagcaaatggaagt |
444 |
Q |
| |
|
|||| |||||||||| ||||| |
|
|
| T |
5902104 |
ccaatttgagcaaatagaagt |
5902084 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 5905982 - 5905888
Alignment:
| Q |
24 |
tcatcaatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactc |
118 |
Q |
| |
|
|||||| |||||||||| ||||||| ||||| || ||||||||||||||||||||||||||||| | ||||| || |||||| ||| |||||| |
|
|
| T |
5905982 |
tcatcagtttgttcttgtgaaagtgcaccaccgcttccaaaagaaacatacaaaactgaacaaggctgctgtttatctaaccatgtcaaacactc |
5905888 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 22096 - 22055
Alignment:
| Q |
42 |
gaaagtgtgccaccactaccaaaagaaacatacaaaactgaa |
83 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
22096 |
gaaagtgttccaccacttccaaaagaaacatacaaaactgaa |
22055 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 2842 - 2805
Alignment:
| Q |
42 |
gaaagtgtgccaccactaccaaaagaaacatacaaaac |
79 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
2842 |
gaaagtgttccaccacttccaaaagaaacatacaaaac |
2805 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 57385 - 57348
Alignment:
| Q |
42 |
gaaagtgtgccaccactaccaaaagaaacatacaaaac |
79 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
57385 |
gaaagtgttccaccacttccaaaagaaacatacaaaac |
57348 |
T |
|
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Target: scaffold0184 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 15459 - 15496
Alignment:
| Q |
42 |
gaaagtgtgccaccactaccaaaagaaacatacaaaac |
79 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
15459 |
gaaagtgttccaccacttccaaaagaaacatacaaaac |
15496 |
T |
|
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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 443
Target Start/End: Complemental strand, 18189931 - 18189870
Alignment:
| Q |
382 |
taggctctggaagatctctgtactcacatgaagtttccttatccaacttgagcaaatggaag |
443 |
Q |
| |
|
|||||||||| |||| |||||||||||||| ||||||| ||||||||| |||||| |||| |
|
|
| T |
18189931 |
taggctctggtagatttctgtactcacatgttgtttcctcatccaacttaggcaaatagaag |
18189870 |
T |
|
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