View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15679_high_6 (Length: 428)
Name: NF15679_high_6
Description: NF15679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15679_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 24 - 398
Target Start/End: Original strand, 55174175 - 55174550
Alignment:
| Q |
24 |
catcaatcaatcttatgaatccatcatttgttgttgttatattattgtaatgatcatggatgtagtaattnnnnnnnnn-ccatgaatgaattatacatc |
122 |
Q |
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| T |
55174175 |
catcaatcaatcttatgaatccatcatctgttgttattatattattgtaatgatcatggatgtagtgattaaataaaaaaccatgaatgaattatacatc |
55174274 |
T |
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| Q |
123 |
aggggtgctgcgagtgtaatggatggaaccggagaagaggagctcgcgtcttccattgacaaagagtgatttaccatcataagtaacattgttaatgcct |
222 |
Q |
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| T |
55174275 |
aggggtgctgcgagtgtaatggatggaaccggagaagaggagctcgcgtcttccattgacaaagagtgatttaccatcataagtaacattgttaatgcct |
55174374 |
T |
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| Q |
223 |
gcaacacgaccatgatcatgtgctgcggcaatggctggtaagagaactaataatatggaaaggaaggcgagattgtgagtgggagtcatgtttgtttggc |
322 |
Q |
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| T |
55174375 |
gcaacacgaccatgatcatgtgctgcgacaatggctggtaagagaactaataatatggaaaggaaggcgagattgtgagtgggagtcatgtttgtttgac |
55174474 |
T |
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| Q |
323 |
gcaaacatacacggctcaaacaatatggtgagagaggcggtcagaataaacgagccttcgcctggatcaaccttct |
398 |
Q |
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| T |
55174475 |
gcaaacatacacggctcaaacaatatgatgagagaggtggtcagaataaacgagccttcacctggatcaaccttct |
55174550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 27720302 - 27720258
Alignment:
| Q |
116 |
atacatcaggggtgctgcgagtgtaatggatggaaccggagaaga |
160 |
Q |
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| T |
27720302 |
atacatcaggggtgcttcgtggataatggatggaaccggagaaga |
27720258 |
T |
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