View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15679_high_9 (Length: 396)
Name: NF15679_high_9
Description: NF15679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15679_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 8 - 285
Target Start/End: Complemental strand, 36602398 - 36602121
Alignment:
| Q |
8 |
ggagcacagatgaaaagacagctggctttctatctgagttaggagttattgctcatgttgatcatcctaatactgcaaagcttgttggatgttgtgtaga |
107 |
Q |
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| T |
36602398 |
ggagcacagatgaaaagacagctggctttctatctgagttaggagttattgctcatgttgatcatcctaataccgcaaagcttgttggatgttgtgtaga |
36602299 |
T |
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| Q |
108 |
gggagaaatgcatcttgtcttcgaattgtctacactgggaagtttaggatatgttcttcatggtttgtagatactttgaactctctcatgatgacaatca |
207 |
Q |
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| T |
36602298 |
gggagaaatgcatcttgtcttcgaattgtctacactgggaagtttaggatacgttcttcatggtttgtagatactttgaactctctcatgatgacaatca |
36602199 |
T |
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| Q |
208 |
cttttgaacttattttgtttttatatcaaatggaatgaaactcaatactcgagggtttacaaccctcgcacacatatt |
285 |
Q |
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| T |
36602198 |
cttttaaacttattttgttttcatatcaaatggaatcaaactcaatactcgagggtttacaaccctcgcacacatatt |
36602121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 286 - 396
Target Start/End: Complemental strand, 36602086 - 36601976
Alignment:
| Q |
286 |
aacatgctttcaactttaaatgtacttatagcttattccctcatgatgtatttcaggttcagataaaaccaaattggattggagtaaaaggtataaagtt |
385 |
Q |
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| T |
36602086 |
aacatactttcaactttaaatgtacttatagcttattccctcatgatgtatttcaggttcagataaaaccaaattggattggagtaaaaggtataaagtt |
36601987 |
T |
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| Q |
386 |
gctcttggaat |
396 |
Q |
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| T |
36601986 |
gctctcggaat |
36601976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 125
Target Start/End: Original strand, 47014089 - 47014181
Alignment:
| Q |
33 |
ctttctatctgagttaggagttattgctcatgttgatcatcctaatactgcaaagcttgttggatgttgtgtagagggagaaatgcatcttgt |
125 |
Q |
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| T |
47014089 |
ctttctatctgagctaggcattattgctcatctaaaccatcctaacactgccagacttattggatgtggtgtagaaggagaaatgcaccttgt |
47014181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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