View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1567_low_3 (Length: 327)
Name: NF1567_low_3
Description: NF1567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1567_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 43974516 - 43974217
Alignment:
| Q |
18 |
gactcaatctctgccaaatcagaactcttagataagatagagtcctcttttgc-ttcaccaatttctcatattcaattccctttgaaatcaactcatgaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43974516 |
gactcaatctctgccaaatcagaactcttagataagatagagtcctctttttccttcaccaatttctcatattcaattccctttgaaatcaactcatgaa |
43974417 |
T |
|
| Q |
117 |
acttctttggattataagtaggtgcattaggacctaataacaatccactttcatatttcttgaatttgtcaccttcatcaagcctatgaagtcttccagt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43974416 |
acttctttggattataagtaggtgcattaggacctaataacaatccactttcatatttcttgaatttgtcaccttcatcaagcctatgaagtcttccagt |
43974317 |
T |
|
| Q |
217 |
catttgttgaccaccaagaataagattcttagcattcgcatttggatcacaaccgtccaaactaatactttgccatccatcatcagtgataacaaaccta |
316 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43974316 |
catttgttgaccaccaagaataagattcttagcattctcatttggatcacaaccatccaaactaatactttgccatccatcatcaatgataacaaaccta |
43974217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 82 - 315
Target Start/End: Original strand, 43564151 - 43564384
Alignment:
| Q |
82 |
ctcatattcaattccctttgaaatcaactcatgaaacttctttggattataagtaggtgcattaggacctaataacaatccactttcatatttcttgaat |
181 |
Q |
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|
||||| ||||||||||||| |||||||||| | || | | ||||||||| ||| ||||| ||||||||||| ||||||||||||||||||||| | ||| |
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| T |
43564151 |
ctcatgttcaattccctttaaaatcaactccttaatcgtttttggattaaaaggaggtgaattaggacctagtaacaatccactttcatatttttggaac |
43564250 |
T |
|
| Q |
182 |
ttgtcaccttcatcaagcctatgaagtcttccagtcatttgttgaccaccaagaataagattcttagcattcgcatttggatcacaaccgtccaaactaa |
281 |
Q |
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||||| |||||| ||| ||||||||| |||||||||||||||| ||| ||||||| ||||||||| |||| ||||||||||| ||| || ||||||| |
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| T |
43564251 |
ttgtctccttcaccaaacctatgaagccttccagtcatttgttcacccccaagaacaagattctttgcatcttcatttggatcagcaccatctaaactaa |
43564350 |
T |
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| Q |
282 |
tactttgccatccatcatcagtgataacaaacct |
315 |
Q |
| |
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| |||||||||||||||||| ||||||||||||| |
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| T |
43564351 |
tgctttgccatccatcatcaatgataacaaacct |
43564384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 36432041 - 36432336
Alignment:
| Q |
18 |
gactcaatctctgccaaatcagaactcttagataagatagagtcctct-tttgcttcaccaatttctcatattcaattccctttgaaatcaactcatgaa |
116 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||| | | |||||| |||| || |||| | ||||| |||||||||||||| ||||||||| | || |
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| T |
36432041 |
gactcaatctcagccaaatcagaactcttggataaaactgcctcctctctttgtctctccaaatgctcatgttcaattccctttgtaatcaactccttaa |
36432140 |
T |
|
| Q |
117 |
acttctttggattataagtaggtgcattaggacctaataacaatccactttcatatttcttgaatttgtcaccttcatcaagcctatgaagtcttccagt |
216 |
Q |
| |
|
| || |||||| ||| ||||| ||||||||| || | |||||||||||| ||||| ||||| |||||||||||||||||||||||||| || ||||| |
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|
| T |
36432141 |
ttgttttcggattaaaaggaggtgaattaggacccaacaccaatccactttcgtattttttgaacttgtcaccttcatcaagcctatgaagcctcccagt |
36432240 |
T |
|
| Q |
217 |
catttgttgaccaccaagaataagattcttagcattcgcatttggatcacaaccgtccaaactaatactttgccatccatcatcagtgataacaaa |
312 |
Q |
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||| |||| ||||||||||| ||||||||| |||| | |||| |||||| ||| ||||| ||||||||||||||||||| ||| ||| |||||| |
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| T |
36432241 |
catctgttcaccaccaagaacaagattctttgcatccacattaggatcatcaccatccaagataatactttgccatccatcgtcaatgacaacaaa |
36432336 |
T |
|
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