View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1567_low_5 (Length: 234)

Name: NF1567_low_5
Description: NF1567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1567_low_5
NF1567_low_5
[»] chr6 (64 HSPs)
chr6 (14-217)||(28141094-28141297)
chr6 (82-217)||(29827545-29827680)
chr6 (82-217)||(2186373-2186508)
chr6 (94-218)||(28150730-28150854)
chr6 (94-217)||(28096952-28097075)
chr6 (84-217)||(29469762-29469895)
chr6 (130-214)||(26624821-26624905)
chr6 (130-214)||(26730798-26730882)
chr6 (96-215)||(26863129-26863248)
chr6 (116-214)||(28186962-28187060)
chr6 (95-217)||(28296241-28296363)
chr6 (95-217)||(28515710-28515832)
chr6 (95-217)||(29758956-29759078)
chr6 (131-215)||(27680520-27680604)
chr6 (150-217)||(26850280-26850347)
chr6 (130-217)||(26885638-26885725)
chr6 (138-217)||(26960681-26960760)
chr6 (150-217)||(27697148-27697215)
chr6 (95-217)||(29673519-29673641)
chr6 (153-215)||(31286114-31286176)
chr6 (84-217)||(28902155-28902288)
chr6 (95-215)||(26938581-26938701)
chr6 (129-217)||(27529845-27529933)
chr6 (97-217)||(28327037-28327157)
chr6 (97-217)||(28504673-28504793)
chr6 (82-213)||(26804018-26804149)
chr6 (84-215)||(27216007-27216138)
chr6 (150-217)||(27591574-27591641)
chr6 (150-217)||(27676173-27676240)
chr6 (131-218)||(29694932-29695019)
chr6 (150-213)||(29842548-29842611)
chr6 (163-217)||(26637196-26637250)
chr6 (163-217)||(26743162-26743216)
chr6 (128-206)||(29476608-29476686)
chr6 (165-214)||(25484615-25484664)
chr6 (165-214)||(25581278-25581327)
chr6 (165-214)||(26144424-26144473)
chr6 (150-207)||(27603254-27603311)
chr6 (150-215)||(28787811-28787876)
chr6 (150-215)||(28793932-28793997)
chr6 (104-216)||(26657531-26657643)
chr6 (104-216)||(26763502-26763614)
chr6 (150-214)||(27609679-27609743)
chr6 (150-214)||(27717058-27717122)
chr6 (150-217)||(25075435-25075502)
chr6 (163-218)||(25491879-25491934)
chr6 (162-217)||(26813105-26813160)
chr6 (150-217)||(27663762-27663829)
chr6 (150-217)||(27704822-27704889)
chr6 (129-207)||(29523458-29523536)
chr6 (165-214)||(25512447-25512496)
chr6 (165-214)||(25546539-25546588)
chr6 (165-214)||(26057478-26057527)
chr6 (165-214)||(26077448-26077497)
chr6 (150-215)||(26648028-26648093)
chr6 (150-215)||(26753996-26754061)
chr6 (164-217)||(26951299-26951352)
chr6 (164-217)||(26978936-26978989)
chr6 (138-217)||(28490040-28490119)
chr6 (138-217)||(29802450-29802529)
chr6 (86-216)||(29727451-29727581)
chr6 (153-217)||(26825381-26825445)
chr6 (162-218)||(28478946-28479002)
chr6 (162-218)||(29791401-29791457)
[»] chr1 (4 HSPs)
chr1 (95-216)||(26137439-26137560)
chr1 (95-218)||(5921979-5922102)
chr1 (130-217)||(266888-266975)
chr1 (150-217)||(28126243-28126310)
[»] chr2 (2 HSPs)
chr2 (95-213)||(17991704-17991822)
chr2 (120-211)||(3281218-3281309)
[»] chr5 (1 HSPs)
chr5 (84-217)||(16692417-16692550)
[»] scaffold0019 (1 HSPs)
scaffold0019 (95-214)||(56795-56914)
[»] chr8 (6 HSPs)
chr8 (95-217)||(12590291-12590413)
chr8 (99-213)||(35984859-35984973)
chr8 (84-217)||(16371627-16371760)
chr8 (131-217)||(16441603-16441689)
chr8 (85-213)||(31906614-31906742)
chr8 (95-218)||(16450444-16450567)
[»] scaffold0573 (1 HSPs)
scaffold0573 (84-217)||(7506-7639)
[»] scaffold0277 (2 HSPs)
scaffold0277 (130-213)||(3242-3325)
scaffold0277 (130-213)||(12205-12288)
[»] scaffold0007 (3 HSPs)
scaffold0007 (84-215)||(67865-67996)
scaffold0007 (84-214)||(32519-32649)
scaffold0007 (84-214)||(37268-37398)
[»] chr4 (7 HSPs)
chr4 (151-217)||(18688179-18688245)
chr4 (151-217)||(18678122-18678188)
chr4 (151-217)||(18697965-18698031)
chr4 (151-217)||(18722635-18722701)
chr4 (151-217)||(18730060-18730126)
chr4 (151-217)||(18654042-18654108)
chr4 (165-217)||(5089533-5089585)
[»] chr3 (1 HSPs)
chr3 (95-217)||(615346-615468)
[»] scaffold1870 (1 HSPs)
scaffold1870 (153-217)||(337-401)
[»] scaffold0419 (1 HSPs)
scaffold0419 (153-217)||(9055-9119)
[»] scaffold0349 (1 HSPs)
scaffold0349 (150-214)||(2098-2162)
[»] scaffold0012 (2 HSPs)
scaffold0012 (95-211)||(211631-211747)
scaffold0012 (84-215)||(238363-238495)


Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 64)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 217
Target Start/End: Complemental strand, 28141297 - 28141094
Alignment:
Q  14 cataggcattggcagcagatggaacagggacaaaataaaggttaaagactaaaaaacatctataccagtcttactcaccaaattttcttctaaaacttgg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28141297 cataggcattggcagcagatggaacagggacaaaataaaggttaaagactaaaaaacatctataccagtcttactcaccaaattttcttctaaaacttgg 28141198  T
Q  114 actatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgta 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28141197 actatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgta 28141098  T
Q  214 atgt 217  Q
    ||||    
T  28141097 atgt 28141094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 82 - 217
Target Start/End: Complemental strand, 29827680 - 29827545
Alignment:
Q  82 tcttactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaat 181  Q
    ||||||||||| ||||||||||||| ||||| ||||| |||| || |||||| || ||||| || || ||||||||||| |||||||||||||| |||||    
T  29827680 tcttactcaccgaattttcttctaagacttgaactatatcttcatagaaccacaacctactacgctttccaggctctttcggtgattcttgtcgtacaat 29827581  T
Q  182 ttctttacccatctcctctatcaagtcatgtaatgt 217  Q
    |||||||||||| || ||||||||||||||||||||    
T  29827580 ttctttacccatgtcttctatcaagtcatgtaatgt 29827545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 82 - 217
Target Start/End: Complemental strand, 2186508 - 2186373
Alignment:
Q  82 tcttactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaat 181  Q
    ||||||||||| ||||| | | ||||||  | ||||| |||| |||| |||| || ||||| ||||| |||||||||||||||||||||||||| || ||    
T  2186508 tcttactcaccgaatttgcatgtaaaacaggaactatatcttcatgggaccacaacctactacgttttccaggctcttttggtgattcttgtcgtacgat 2186409  T
Q  182 ttctttacccatctcctctatcaagtcatgtaatgt 217  Q
    |||||||||||| |||||||||||||||||||||||    
T  2186408 ttctttacccatttcctctatcaagtcatgtaatgt 2186373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 94 - 218
Target Start/End: Complemental strand, 28150854 - 28150730
Alignment:
Q  94 aattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccat 193  Q
    ||||| ||||||||||||| | ||| |||| || |||||| || ||  | || ||||||||||||||||||||||||||||| |||||||||||||||||    
T  28150854 aatttccttctaaaacttgaaatatatcttcatagaaccacaacctgttgcgcttcccaggctcttttggtgattcttgtcgtacaatttctttacccat 28150755  T
Q  194 ctcctctatcaagtcatgtaatgtt 218  Q
     || |||||||||||||||||||||    
T  28150754 gtcttctatcaagtcatgtaatgtt 28150730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 94 - 217
Target Start/End: Original strand, 28096952 - 28097075
Alignment:
Q  94 aattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccat 193  Q
    ||||||||||||||||||| | ||| |||| ||||||| | || || || ||||| ||||| |||||||||||||||||||  |||||||||||||||||    
T  28096952 aattttcttctaaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccat 28097051  T
Q  194 ctcctctatcaagtcatgtaatgt 217  Q
     || ||||||||||||||||||||    
T  28097052 gtcttctatcaagtcatgtaatgt 28097075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 84 - 217
Target Start/End: Complemental strand, 29469895 - 29469762
Alignment:
Q  84 ttactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaattt 183  Q
    |||||||||  |||||||||||||||||| | ||| ||||||  | ||||||| ||||| ||||| ||||| ||||  ||||||||||||| ||||||||    
T  29469895 ttactcaccgtattttcttctaaaacttgaattatatctttagaggaccataacctactgcgttttccaggatcttcaggtgattcttgtctaacaattt 29469796  T
Q  184 ctttacccatctcctctatcaagtcatgtaatgt 217  Q
    |||| ||||| ||||||||||| |||||||||||    
T  29469795 ctttccccatatcctctatcaaatcatgtaatgt 29469762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 130 - 214
Target Start/End: Complemental strand, 26624905 - 26624821
Alignment:
Q  130 accataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaa 214  Q
    ||||||||||||| ||||  ||||||||||| |||||||||||||| || ||| |||||||||| ||||||||||||||||||||    
T  26624905 accataatctacttcgttctccaggctctttaggtgattcttgtcggacgattgctttacccatgtcctctatcaagtcatgtaa 26624821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 130 - 214
Target Start/End: Complemental strand, 26730882 - 26730798
Alignment:
Q  130 accataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaa 214  Q
    ||||||||||||| ||||  ||||||||||| |||||||||||||| || ||| |||||||||| ||||||||||||||||||||    
T  26730882 accataatctacttcgttctccaggctctttaggtgattcttgtcggacgattgctttacccatgtcctctatcaagtcatgtaa 26730798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 26863248 - 26863129
Alignment:
Q  96 ttttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatct 195  Q
    |||||||||||||| |||| ||| || | |||  ||||||| ||||| ||||  || |||||||| || ||||||||||| || |||||||| ||||| |    
T  26863248 ttttcttctaaaacgtggattatatcatcatgacaccataacctacttcgttcacccggctctttaggagattcttgtcggacgatttctttgcccatgt 26863149  T
Q  196 cctctatcaagtcatgtaat 215  Q
    ||||||||||||||||||||    
T  26863148 cctctatcaagtcatgtaat 26863129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 116 - 214
Target Start/End: Complemental strand, 28187060 - 28186962
Alignment:
Q  116 tatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaa 214  Q
    |||||||||||||||||| || ||||| ||| | |||||||||||||| || ||||  || ||||||||||||||||| | |||||||||| |||||||    
T  28187060 tatgtctttatggaaccacaacctactacgtcttccaggctcttttggagactctttccggacaatttctttacccattttctctatcaaggcatgtaa 28186962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 95 - 217
Target Start/End: Original strand, 28296241 - 28296363
Alignment:
Q  95 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 194  Q
    |||||||||||| || || | |||||||||||||||||| || ||||| ||| | || ||||||||||| |||| ||   | |||||||||||||||||     
T  28296241 attttcttctaagacatgaattatgtctttatggaaccacaacctactacgtcttcctggctcttttggagatttttcatgcacaatttctttacccatt 28296340  T
Q  195 tcctctatcaagtcatgtaatgt 217  Q
    | |||||||||| ||||||||||    
T  28296341 ttctctatcaaggcatgtaatgt 28296363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 95 - 217
Target Start/End: Complemental strand, 28515832 - 28515710
Alignment:
Q  95 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 194  Q
    |||||||||||| || || | |||||||||||||||||| || ||||| ||| | || ||||||||||| |||| ||   | |||||||||||||||||     
T  28515832 attttcttctaagacatgaattatgtctttatggaaccacaacctactacgtcttcctggctcttttggagatttttcatgcacaatttctttacccatt 28515733  T
Q  195 tcctctatcaagtcatgtaatgt 217  Q
    | |||||||||| ||||||||||    
T  28515732 ttctctatcaaggcatgtaatgt 28515710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 95 - 217
Target Start/End: Original strand, 29758956 - 29759078
Alignment:
Q  95 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 194  Q
    |||||||||||||||||| | ||| || |||   |||||||||||| | ||||| ||||| ||||  || |||||||||| ||||||||||||||||||     
T  29758956 attttcttctaaaacttgcattatatcattagaaaaccataatctagtgcgttttccaggatcttgaggcgattcttgtctaacaatttctttacccata 29759055  T
Q  195 tcctctatcaagtcatgtaatgt 217  Q
    ||||||| ||| ||||| |||||    
T  29759056 tcctctaccaaatcatgcaatgt 29759078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 27680604 - 27680520
Alignment:
Q  131 ccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaat 215  Q
    |||||| ||||| ||||  ||||||||||| |||||||||||||| || | |||||||||||| |||| ||||||||||||||||    
T  27680604 ccataacctacttcgttctccaggctctttaggtgattcttgtcggacgacttctttacccatgtcctttatcaagtcatgtaat 27680520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 150 - 217
Target Start/End: Complemental strand, 26850347 - 26850280
Alignment:
Q  150 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 217  Q
    |||||||||||   |||||||||||| || |||||||||||||| |||||||||||||||||||||||    
T  26850347 ccaggctctttaattgattcttgtcggacgatttctttacccatgtcctctatcaagtcatgtaatgt 26850280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 130 - 217
Target Start/End: Complemental strand, 26885725 - 26885638
Alignment:
Q  130 accataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 217  Q
    ||||||| ||||| ||||  |||||||||||   ||||||||| ||||| |||||||||||||| ||||||| |||||||||||||||    
T  26885725 accataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctctaccaagtcatgtaatgt 26885638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 138 - 217
Target Start/End: Complemental strand, 26960760 - 26960681
Alignment:
Q  138 ctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 217  Q
    ||||| ||||| |||||||||||   |||||| ||||||||||||||  ||||||| |||||||||||||||||||||||    
T  26960760 ctactgcgttttccaggctctttaattgattcctgtcgaacaatttccatacccatatcctctatcaagtcatgtaatgt 26960681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 27697148 - 27697215
Alignment:
Q  150 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 217  Q
    ||||||||||| | |||||||||||| || | |||||||||||| |||||||||||||||||||||||    
T  27697148 ccaggctctttagttgattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaatgt 27697215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 217
Target Start/End: Original strand, 29673519 - 29673641
Alignment:
Q  95 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 194  Q
    |||||||||||||||||| | ||| ||||     |||||||| ||||| ||||| ||||| ||||  |||| |||||||| |||||||||||| |||||     
T  29673519 attttcttctaaaacttgaattatatcttcggaaaaccataacctactacgttttccaggatcttcaggtgcttcttgtctaacaatttcttttcccata 29673618  T
Q  195 tcctctatcaagtcatgtaatgt 217  Q
    ||||||| ||| |||||||||||    
T  29673619 tcctctaccaaatcatgtaatgt 29673641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 31286176 - 31286114
Alignment:
Q  153 ggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaat 215  Q
    |||||||| |||||||||||||| || | |||||||||||| |||||||||||||||||||||    
T  31286176 ggctctttaggtgattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaat 31286114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 84 - 217
Target Start/End: Complemental strand, 28902288 - 28902155
Alignment:
Q  84 ttactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaattt 183  Q
    |||||||||  |||||||||||||||||   |||||||||||    ||||||||||||| ||||  |||||||  | |||||||||| |||  |||||||    
T  28902288 ttactcaccgtattttcttctaaaacttcagctatgtctttagcagaccataatctactgcgttctccaggctgatctggtgattctagtctgacaattt 28902189  T
Q  184 ctttacccatctcctctatcaagtcatgtaatgt 217  Q
    |||| ||||| || |||||||  |||||||||||    
T  28902188 cttttcccatatcttctatcagatcatgtaatgt 28902155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 215
Target Start/End: Complemental strand, 26938701 - 26938581
Alignment:
Q  95 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 194  Q
    |||||||| ||| || || ||||| ||||| |  ||||| |||||| | ||||  |||| ||||||   ||||||||||| ||||||||||||||||||     
T  26938701 attttcttttaatacatgaactatatctttgtcaaaccacaatctagtgcgttctccagcctctttgactgattcttgtctaacaatttctttacccatg 26938602  T
Q  195 tcctctatcaagtcatgtaat 215  Q
    ||||| |||||||||||||||    
T  26938601 tcctcaatcaagtcatgtaat 26938581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 217
Target Start/End: Original strand, 27529845 - 27529933
Alignment:
Q  129 aaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 217  Q
    ||||| || ||||| ||||  |||||||| |  |||||||||||||| || | |||||||||||| |||||||||||||||||||||||    
T  27529845 aaccacaacctactgcgttctccaggctcatcgggtgattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaatgt 27529933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 217
Target Start/End: Complemental strand, 28327157 - 28327037
Alignment:
Q  97 tttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctc 196  Q
    |||||||||| || || | ||| |||||||| ||||| || ||||| | ||| ||||| |||||| | |||||||||||||||||||||||||| || |     
T  28327157 tttcttctaagacatgaattatatctttatgaaaccacaacctactacattttccaggttcttttagggattcttgtcgaacaatttctttacctatttg 28327058  T
Q  197 ctctatcaagtcatgtaatgt 217  Q
    ||| || ||| ||||||||||    
T  28327057 ctccattaaggcatgtaatgt 28327037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 217
Target Start/End: Complemental strand, 28504793 - 28504673
Alignment:
Q  97 tttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctc 196  Q
    |||||||||| || || | ||| |||||||| ||||| || ||||| | ||| ||||| |||||| | |||||||||||||||||||||||||| || |     
T  28504793 tttcttctaagacatgaattatatctttatgaaaccacaacctactacattttccaggttcttttagggattcttgtcgaacaatttctttacctatttg 28504694  T
Q  197 ctctatcaagtcatgtaatgt 217  Q
    ||| || ||| ||||||||||    
T  28504693 ctccattaaggcatgtaatgt 28504673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 82 - 213
Target Start/End: Complemental strand, 26804149 - 26804018
Alignment:
Q  82 tcttactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaat 181  Q
    |||||||||| |  ||||||| || ||| || ||||| |||| |||   |||||| ||||| |||||  |||| ||||| |||||||||||||| || |     
T  26804149 tcttactcacaatgttttcttttataacatgaactatatcttcatgacgccataacctacttcgtttttcaggatctttaggtgattcttgtcggacgac 26804050  T
Q  182 ttctttacccatctcctctatcaagtcatgta 213  Q
    |||||||||||| |||| ||||||||||||||    
T  26804049 ttctttacccatgtcctttatcaagtcatgta 26804018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 84 - 215
Target Start/End: Complemental strand, 27216138 - 27216007
Alignment:
Q  84 ttactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaattt 183  Q
    |||||||| | |||||||| || |||||| ||||| || |  || ||||| || ||||| |||| |||||| |  |  |||||||||||||| |||| ||    
T  27216138 ttactcacgatattttcttttagaacttgaactatatcatcgtgaaaccacaacctactgcgttccccaggattgtcgggtgattcttgtcggacaactt 27216039  T
Q  184 ctttacccatctcctctatcaagtcatgtaat 215  Q
    || ||||||| |||||||||||||||||||||    
T  27216038 ctctacccatatcctctatcaagtcatgtaat 27216007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 27591574 - 27591641
Alignment:
Q  150 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 217  Q
    ||||||||||| |||||||||||||| || | ||||||||||||  |||||||||| |||||||||||    
T  27591574 ccaggctctttaggtgattcttgtcggacgacttctttacccatgacctctatcaattcatgtaatgt 27591641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 27676173 - 27676240
Alignment:
Q  150 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 217  Q
    ||||||||||| |||||||||||||| || | ||||||||||||  |||||||||| |||||||||||    
T  27676173 ccaggctctttaggtgattcttgtcggaccacttctttacccatgacctctatcaattcatgtaatgt 27676240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 131 - 218
Target Start/End: Original strand, 29694932 - 29695019
Alignment:
Q  131 ccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtt 218  Q
    |||||| ||| | ||||| ||||| ||||  ||||||||| ||| |||||||||||| ||||| ||||||||||| ||||||||||||    
T  29694932 ccataacctagtgcgttttccaggatcttcaggtgattctcgtctaacaatttctttccccatatcctctatcaaatcatgtaatgtt 29695019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 29842548 - 29842611
Alignment:
Q  150 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgta 213  Q
    ||||||||||| | ||||||| |||| ||||||||||||||||| || ||||||||||||||||    
T  29842548 ccaggctctttcgttgattctggtcgtacaatttctttacccatgtcttctatcaagtcatgta 29842611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 26637250 - 26637196
Alignment:
Q  163 gtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 217  Q
    ||||||||||||| || |||||| ||||||| |||||||||||||||||||||||    
T  26637250 gtgattcttgtcggacgatttctatacccatatcctctatcaagtcatgtaatgt 26637196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 26743216 - 26743162
Alignment:
Q  163 gtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 217  Q
    ||||||||||||| || |||||| ||||||| |||||||||||||||||||||||    
T  26743216 gtgattcttgtcggacgatttctatacccatatcctctatcaagtcatgtaatgt 26743162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 206
Target Start/End: Original strand, 29476608 - 29476686
Alignment:
Q  128 gaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaag 206  Q
    ||||||||||||||| ||| ||||||| |||| ||||||||| |  ||||||||||||||||||||   ||||||||||    
T  29476608 gaaccataatctactacgtctcccaggatcttctggtgattcctcacgaacaatttctttacccatgctctctatcaag 29476686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 25484664 - 25484615
Alignment:
Q  165 gattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaa 214  Q
    |||||||||||||| | |||||||||||| ||||||||||||||||||||    
T  25484664 gattcttgtcgaacgacttctttacccatgtcctctatcaagtcatgtaa 25484615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 25581327 - 25581278
Alignment:
Q  165 gattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaa 214  Q
    ||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  25581327 gattcttgtcggacgatttctttacccatgtcctctatcaagtcatgtaa 25581278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 26144473 - 26144424
Alignment:
Q  165 gattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaa 214  Q
    ||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  26144473 gattcttgtcggacgatttctttacccatgtcctctatcaagtcatgtaa 26144424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 27603254 - 27603311
Alignment:
Q  150 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagt 207  Q
    ||||||||||| |||||||||||||| || | |||||||||||| |||||||||||||    
T  27603254 ccaggctctttaggtgattcttgtcggacgacttctttacccatgtcctctatcaagt 27603311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 28787876 - 28787811
Alignment:
Q  150 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaat 215  Q
    ||||||||||| || ||||||||||| || | |||||||||||| || ||||||||||||||||||    
T  28787876 ccaggctctttaggcgattcttgtcggacgacttctttacccatgtcttctatcaagtcatgtaat 28787811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 28793997 - 28793932
Alignment:
Q  150 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaat 215  Q
    ||||||||||| || ||||||||||| || | |||||||||||| || ||||||||||||||||||    
T  28793997 ccaggctctttaggcgattcttgtcggacgacttctttacccatgtcttctatcaagtcatgtaat 28793932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 216
Target Start/End: Complemental strand, 26657643 - 26657531
Alignment:
Q  104 taaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatc 203  Q
    |||||| || |||||||| || ||  ||||||| ||||| ||||  || ||||||||   |||||||||||| || |||||||||||||| |||||||||    
T  26657643 taaaacatgaactatgtcattgtgacaccataacctactacgttctccgggctctttacttgattcttgtcggacgatttctttacccatgtcctctatc 26657544  T
Q  204 aagtcatgtaatg 216  Q
    || || |||||||    
T  26657543 aaatcgtgtaatg 26657531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 216
Target Start/End: Complemental strand, 26763614 - 26763502
Alignment:
Q  104 taaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatc 203  Q
    |||||| || |||||||| || ||  ||||||| ||||| ||||  || ||||||||   |||||||||||| || |||||||||||||| |||||||||    
T  26763614 taaaacatgaactatgtcattgtgacaccataacctactacgttctccgggctctttacttgattcttgtcggacgatttctttacccatgtcctctatc 26763515  T
Q  204 aagtcatgtaatg 216  Q
    || || |||||||    
T  26763514 aaatcgtgtaatg 26763502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 27609679 - 27609743
Alignment:
Q  150 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaa 214  Q
    |||||||||||   |||||||||||| || | |||||||||||| ||||||||||||||||||||    
T  27609679 ccaggctctttaattgattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaa 27609743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 27717058 - 27717122
Alignment:
Q  150 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaa 214  Q
    |||||||||||   |||||||||||| || | |||||||||||| ||||||||||||||||||||    
T  27717058 ccaggctctttaattgattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaa 27717122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 217
Target Start/End: Complemental strand, 25075502 - 25075435
Alignment:
Q  150 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 217  Q
    |||||||||||   |||||| ||||| || |||||||||||||| ||||||| |||||||||||||||    
T  25075502 ccaggctctttaattgattcatgtcggacgatttctttacccatgtcctctaacaagtcatgtaatgt 25075435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 25491879 - 25491934
Alignment:
Q  163 gtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtt 218  Q
    |||||||||||||||| | |||||||||||| | ||||||||||| ||||||||||    
T  25491879 gtgattcttgtcgaacgacttctttacccatgtgctctatcaagttatgtaatgtt 25491934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 26813160 - 26813105
Alignment:
Q  162 ggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 217  Q
    |||||||||||| | ||||||||||||||| | | |||||||||||||||||||||    
T  26813160 ggtgattcttgttggacaatttctttacccgtgtgctctatcaagtcatgtaatgt 26813105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 27663762 - 27663829
Alignment:
Q  150 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 217  Q
    |||||||||||   |||||||||||| || |||||| ||||||| | |||||||||||||||||||||    
T  27663762 ccaggctctttaattgattcttgtcggactatttctatacccatatactctatcaagtcatgtaatgt 27663829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 27704822 - 27704889
Alignment:
Q  150 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 217  Q
    |||||||||||   |||||||||||| || | |||||||||||| ||||||||||||| |||||||||    
T  27704822 ccaggctctttaattgattcttgtcggacgacttctttacccatatcctctatcaagttatgtaatgt 27704889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 207
Target Start/End: Complemental strand, 29523536 - 29523458
Alignment:
Q  129 aaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagt 207  Q
    ||||||| |||||| | ||||||||||||| ||||||||||| | ||||||| ||||||| |||| | ||| |||||||    
T  29523536 aaccatagtctactacatttcccaggctctgttggtgattctcgacgaacaagttctttagccattttctcgatcaagt 29523458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 25512496 - 25512447
Alignment:
Q  165 gattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaa 214  Q
    ||||||||||| ||  ||||||||||||| ||||||||||||||||||||    
T  25512496 gattcttgtcggacggtttctttacccatgtcctctatcaagtcatgtaa 25512447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 25546588 - 25546539
Alignment:
Q  165 gattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaa 214  Q
    ||||||||||| || | |||||||||||| ||||||||||||||||||||    
T  25546588 gattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaa 25546539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 26057527 - 26057478
Alignment:
Q  165 gattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaa 214  Q
    ||||||||||| || | |||||||||||| ||||||||||||||||||||    
T  26057527 gattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaa 26057478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 26077497 - 26077448
Alignment:
Q  165 gattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaa 214  Q
    ||||||||||| || | |||||||||||| ||||||||||||||||||||    
T  26077497 gattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaa 26077448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 26648093 - 26648028
Alignment:
Q  150 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaat 215  Q
    |||||||||||  ||||||||||||| || | ||| |||||||| |||| ||||||||||||||||    
T  26648093 ccaggctctttacgtgattcttgtcggactacttccttacccatgtcctttatcaagtcatgtaat 26648028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 26754061 - 26753996
Alignment:
Q  150 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaat 215  Q
    |||||||||||  ||||||||||||| || | ||| |||||||| |||| ||||||||||||||||    
T  26754061 ccaggctctttacgtgattcttgtcggactacttccttacccatgtcctttatcaagtcatgtaat 26753996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 26951352 - 26951299
Alignment:
Q  164 tgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 217  Q
    |||||||||||| |  |||||| ||||||| |||||||||||||||||||||||    
T  26951352 tgattcttgtcggatgatttctatacccatatcctctatcaagtcatgtaatgt 26951299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 26978989 - 26978936
Alignment:
Q  164 tgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 217  Q
    |||||||||||| || |||||| ||||||| ||||||||||||| |||||||||    
T  26978989 tgattcttgtcggacgatttctatacccatatcctctatcaagtaatgtaatgt 26978936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 217
Target Start/End: Original strand, 28490040 - 28490119
Alignment:
Q  138 ctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 217  Q
    ||||| ||||| ||||| | || |||||| ||||||| |||||||||||| ||||| ||||||| ||| || ||||||||    
T  28490040 ctactgcgttttccaggattttctggtgactcttgtctaacaatttctttccccatatcctctaccaaatcgtgtaatgt 28490119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #60
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 217
Target Start/End: Original strand, 29802450 - 29802529
Alignment:
Q  138 ctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 217  Q
    ||||| ||||| ||||| | || |||||| ||||||| |||||||||||| ||||| ||||||| ||| || ||||||||    
T  29802450 ctactgcgttttccaggattttctggtgactcttgtctaacaatttctttccccatatcctctaccaaatcgtgtaatgt 29802529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #61
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 216
Target Start/End: Original strand, 29727451 - 29727581
Alignment:
Q  86 actcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttct 185  Q
    |||||||  |||||||||||||||||    ||| |||||| ||  |||||| ||||| ||||  || || |  |||||||| ||||||| ||||||||||    
T  29727451 actcaccttattttcttctaaaactttttgtatatctttagggtcccataacctactgcgttctcccggattatttggtgactcttgtctaacaatttct 29727550  T
Q  186 ttacccatctcctctatcaagtcatgtaatg 216  Q
    || ||||| || |||| ||| ||||||||||    
T  29727551 tttcccatatcttctagcaaatcatgtaatg 29727581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #62
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 26825445 - 26825381
Alignment:
Q  153 ggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 217  Q
    |||||||| | ||||| |||||| || | |||||| ||||| |||| ||||||||||||||||||    
T  26825445 ggctctttagatgattgttgtcggactacttctttgcccatgtcctttatcaagtcatgtaatgt 26825381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #63
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 28478946 - 28479002
Alignment:
Q  162 ggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtt 218  Q
    |||||||||  || |||||||||||| ||||| |||||||| || ||||||||||||    
T  28478946 ggtgattctcttctaacaatttctttccccatatcctctattaaatcatgtaatgtt 28479002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #64
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 29791401 - 29791457
Alignment:
Q  162 ggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtt 218  Q
    |||||||||  || |||||||||||| ||||| |||||||| || ||||||||||||    
T  29791401 ggtgattctcttctaacaatttctttccccatatcctctattaaatcatgtaatgtt 29791457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 95 - 216
Target Start/End: Complemental strand, 26137560 - 26137439
Alignment:
Q  95 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 194  Q
    |||||||| |||||| || ||||| |||| ||| ||||| || ||||| ||||| ||||| ||||| |||||||||||||| |||||||||||||||||     
T  26137560 attttcttttaaaacatgaactatatcttcatgaaaccacaacctactgcgttttccaggttctttgggtgattcttgtcggacaatttctttacccata 26137461  T
Q  195 tcctctatcaagtcatgtaatg 216  Q
    ||||||||||||||||||||||    
T  26137460 tcctctatcaagtcatgtaatg 26137439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 95 - 218
Target Start/End: Original strand, 5921979 - 5922102
Alignment:
Q  95 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 194  Q
    |||||||||||||||||| ||||| |||| | || ||||||| ||||| || || ||||||||||| ||||||||||||| |||||||||||| |||||     
T  5921979 attttcttctaaaacttgaactatatcttcagggcaccataacctactgcgctttccaggctctttcggtgattcttgtctaacaatttcttttcccatg 5922078  T
Q  195 tcctctatcaagtcatgtaatgtt 218  Q
    ||||||||||  ||||||||||||    
T  5922079 tcctctatcacatcatgtaatgtt 5922102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 130 - 217
Target Start/End: Original strand, 266888 - 266975
Alignment:
Q  130 accataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 217  Q
    ||||||| ||||| ||||  ||||||||||| ||||||||||| || || | |||||||||||| |||||||||| ||||||||||||    
T  266888 accataacctacttcgttctccaggctctttaggtgattcttggcggaccacttctttacccatgtcctctatcatgtcatgtaatgt 266975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 28126243 - 28126310
Alignment:
Q  150 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 217  Q
    |||||||||||  |||||||||  || || |||||||||||| | |||||||||||||||||||||||    
T  28126243 ccaggctctttacgtgattctttccggacgatttctttacccgtatcctctatcaagtcatgtaatgt 28126310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 95 - 213
Target Start/End: Original strand, 17991704 - 17991822
Alignment:
Q  95 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 194  Q
    |||||| | |||||| || |||||||| ||||   |||| |||||||||||||  ||||||||||| ||||||||||| ||||| ||||||||||||||     
T  17991704 attttcctgtaaaacatgaactatgtcattataacaccacaatctactccgttctccaggctctttaggtgattcttgccgaacgatttctttacccatg 17991803  T
Q  195 tcctctatcaagtcatgta 213  Q
    |||||||||||||||||||    
T  17991804 tcctctatcaagtcatgta 17991822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 211
Target Start/End: Complemental strand, 3281309 - 3281218
Alignment:
Q  120 tctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatg 211  Q
    |||| ||||||||| || || || ||||| ||||||||| ||  |||||| ||||  ||||||||||||||||| || ||||||||||||||    
T  3281309 tcttcatggaaccacaacctgctacgttttccaggctctcttactgattcctgtcttacaatttctttacccatgtcttctatcaagtcatg 3281218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 84 - 217
Target Start/End: Complemental strand, 16692550 - 16692417
Alignment:
Q  84 ttactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaattt 183  Q
    |||||||||| |||||||||||||||||| ||||| ||||  || ||||| || ||||| ||||| ||||| | |||||| ||||||| ||| |||||||    
T  16692550 ttactcaccatattttcttctaaaacttgaactatatcttcgtgaaaccacaacctactgcgtttaccaggatgttttggggattcttttcggacaattt 16692451  T
Q  184 ctttacccatctcctctatcaagtcatgtaatgt 217  Q
    |||||||||| ||||| ||||||| ||| |||||    
T  16692450 ctttacccatgtcctcaatcaagtgatgcaatgt 16692417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 95 - 214
Target Start/End: Original strand, 56795 - 56914
Alignment:
Q  95 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 194  Q
    |||||||||||| || |  | ||| ||||||||||||||||| ||||| ||| | |||||||||||||| || ||||  || |||||||||||||||||     
T  56795 attttcttctaagacataaattatatctttatggaaccataacctactacgtcttccaggctcttttggagactctttgcggacaatttctttacccatt 56894  T
Q  195 tcctctatcaagtcatgtaa 214  Q
    | |||||||||| |||||||    
T  56895 ttctctatcaaggcatgtaa 56914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 217
Target Start/End: Complemental strand, 12590413 - 12590291
Alignment:
Q  95 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 194  Q
    |||||||||||||||||| | ||  ||||||  | ||||||| ||||| ||||| ||||| | ||  ||||||||||||| ||| |||||||| |||||     
T  12590413 attttcttctaaaacttgaattaaatctttagaggaccataacctactacgttttccaggattttccggtgattcttgtctaactatttctttccccata 12590314  T
Q  195 tcctctatcaagtcatgtaatgt 217  Q
    ||||||| ||| |||||||||||    
T  12590313 tcctctaccaaatcatgtaatgt 12590291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 213
Target Start/End: Complemental strand, 35984973 - 35984859
Alignment:
Q  99 tcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcct 198  Q
    |||||||||||||| | ||| |||| |||  ||||||| | ||| || || ||||| |||| |||||||||  ||||||||||||| |||||||| ||||    
T  35984973 tcttctaaaacttgaattatatcttcatgagaccataaccgactacgctttccaggttcttctggtgattccagtcgaacaatttccttacccatgtcct 35984874  T
Q  199 ctatcaagtcatgta 213  Q
    |||||||| ||||||    
T  35984873 ctatcaaggcatgta 35984859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 84 - 217
Target Start/End: Original strand, 16371627 - 16371760
Alignment:
Q  84 ttactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaattt 183  Q
    ||||| ||| |||| |||||||||||||| ||||  || ||    |||||||| ||||| ||||  || ||||| ||||||||||||||||| |||||||    
T  16371627 ttacttaccgaattgtcttctaaaacttgaactacatcattgacaaaccataacctactacgttcgcctggctcctttggtgattcttgtcggacaattt 16371726  T
Q  184 ctttacccatctcctctatcaagtcatgtaatgt 217  Q
    |||||||||| || |||| || || |||||||||    
T  16371727 ctttacccatgtcttctaccaggttatgtaatgt 16371760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 217
Target Start/End: Complemental strand, 16441689 - 16441603
Alignment:
Q  131 ccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 217  Q
    |||||| ||||| ||||| |||||||| ||||||||||| ||||||||||||||| | ||||| ||   |||||||| |||||||||    
T  16441689 ccataacctactacgtttgccaggctcatttggtgattcctgtcgaacaatttctctgcccatgtctcgtatcaagttatgtaatgt 16441603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 213
Target Start/End: Complemental strand, 31906742 - 31906614
Alignment:
Q  85 tactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttc 184  Q
    |||||||  |||| |||||||||||||| | ||| ||||  || |||||||||| ||| ||||| ||||| || | |||||||||   || |||||||||    
T  31906742 tactcactgaattgtcttctaaaacttgaattatatcttcgtgaaaccataatcgactacgttttccaggttcgtctggtgattccaatctaacaatttc 31906643  T
Q  185 tttacccatctcctctatcaagtcatgta 213  Q
    |||| |||| ||| | |||||||||||||    
T  31906642 tttagccatgtccccaatcaagtcatgta 31906614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 218
Target Start/End: Complemental strand, 16450567 - 16450444
Alignment:
Q  95 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 194  Q
    |||||| | ||||||||||||||  |||| |   |||||||| ||||| ||||| |||||||| | |||||||||  |||| ||||||||| | |||||     
T  16450567 attttcatttaaaacttggactacatcttcacaaaaccataacctactacgtttgccaggctcatgtggtgattcaagtcggacaatttctctgcccatt 16450468  T
Q  195 tcctctatcaagtcatgtaatgtt 218  Q
    |  | ||||| |||||||||||||    
T  16450467 ttttgtatcaggtcatgtaatgtt 16450444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 84 - 217
Target Start/End: Original strand, 7506 - 7639
Alignment:
Q  84 ttactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaattt 183  Q
    |||||||||  |||||||||||||||||   |||||||||||    ||||||||||||| ||||  |||||||  | |||||||||| |||  |||||||    
T  7506 ttactcaccgtattttcttctaaaacttcagctatgtctttagcagaccataatctactgcgttctccaggctgatctggtgattctagtctgacaattt 7605  T
Q  184 ctttacccatctcctctatcaagtcatgtaatgt 217  Q
    |||| ||||| || |||||||  |||||||||||    
T  7606 cttttcccatatcttctatcagatcatgtaatgt 7639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 130 - 213
Target Start/End: Original strand, 3242 - 3325
Alignment:
Q  130 accataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgta 213  Q
    ||||||||||||| | ||  ||||||||||| || ||||||||||| || | |||||||||||| |||| ||||||||||||||    
T  3242 accataatctacttctttctccaggctctttgggcgattcttgtcggacgacttctttacccatgtcctttatcaagtcatgta 3325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 130 - 213
Target Start/End: Original strand, 12205 - 12288
Alignment:
Q  130 accataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgta 213  Q
    ||||||||||||| | ||  ||||||||||| || ||||||||||| || | |||||||||||| |||| ||||||||||||||    
T  12205 accataatctacttctttctccaggctctttgggcgattcttgtcggacgacttctttacccatgtcctttatcaagtcatgta 12288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 84 - 215
Target Start/End: Complemental strand, 67996 - 67865
Alignment:
Q  84 ttactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaattt 183  Q
    |||||||||  |||||| ||||||||||  ||||||||||||    ||||||||||||| ||||  |||||||  | |||||||||| |||  |||||||    
T  67996 ttactcaccgtattttcctctaaaacttcaactatgtctttagatgaccataatctactgcgttctccaggctgatatggtgattctagtctgacaattt 67897  T
Q  184 ctttacccatctcctctatcaagtcatgtaat 215  Q
    |||| ||||| || |||||||  |||||||||    
T  67896 cttttcccatgtcttctatcagatcatgtaat 67865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 214
Target Start/End: Complemental strand, 32649 - 32519
Alignment:
Q  84 ttactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaattt 183  Q
    |||||||||  |||||| || |||||||  ||||||||||||    ||||||||||||| ||||  |||||||  | |||||||||| |||  |||||||    
T  32649 ttactcaccgtattttcctccaaaacttcaactatgtctttaacagaccataatctactgcgttctccaggctgatatggtgattctagtctgacaattt 32550  T
Q  184 ctttacccatctcctctatcaagtcatgtaa 214  Q
    |||| ||||| || |||||||  ||||||||    
T  32549 cttttcccatatcttctatcagatcatgtaa 32519  T

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Target: scaffold0007; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 214
Target Start/End: Complemental strand, 37398 - 37268
Alignment:
Q  84 ttactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaattt 183  Q
    |||||||||  |||||| || |||||||  ||||||||||||    ||||||||||||| ||||  |||||||  | |||||||||| |||  |||||||    
T  37398 ttactcaccgtattttcctccaaaacttcaactatgtctttaacagaccataatctactgcgttctccaggctgatatggtgattctagtctgacaattt 37299  T
Q  184 ctttacccatctcctctatcaagtcatgtaa 214  Q
    |||| ||||| || |||||||  ||||||||    
T  37298 cttttcccatatcttctatcagatcatgtaa 37268  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 217
Target Start/End: Original strand, 18688179 - 18688245
Alignment:
Q  151 caggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 217  Q
    |||||||||| ||||||||||  || |||||||||||||||||  |||||| |||||||||||||||    
T  18688179 caggctctttaggtgattctttccggacaatttctttacccatgacctctagcaagtcatgtaatgt 18688245  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 217
Target Start/End: Original strand, 18678122 - 18678188
Alignment:
Q  151 caggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 217  Q
    |||||||||| ||||||||||  || || ||||||||||||||  |||||| |||||||||||||||    
T  18678122 caggctctttgggtgattctttccggacgatttctttacccatgacctctagcaagtcatgtaatgt 18678188  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 217
Target Start/End: Original strand, 18697965 - 18698031
Alignment:
Q  151 caggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 217  Q
    |||||||||| ||||||||||  || || ||||||||||||||  |||||| |||||||||||||||    
T  18697965 caggctctttgggtgattctttccggacgatttctttacccatggcctctagcaagtcatgtaatgt 18698031  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 217
Target Start/End: Original strand, 18722635 - 18722701
Alignment:
Q  151 caggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 217  Q
    |||||||||| ||||||||||  ||||  ||||||||||||||  |||||| |||||||||||||||    
T  18722635 caggctctttaggtgattctttacgaatgatttctttacccatgacctctagcaagtcatgtaatgt 18722701  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 217
Target Start/End: Original strand, 18730060 - 18730126
Alignment:
Q  151 caggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 217  Q
    |||||||||| ||||||||||  || || ||||||||||||||  |||||| |||||||||||||||    
T  18730060 caggctctttgggtgattctttccggacgatttctttacccatgacctctagcaagtcatgtaatgt 18730126  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 217
Target Start/End: Original strand, 18654042 - 18654108
Alignment:
Q  151 caggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 217  Q
    |||||| ||| ||||||||||  || || ||||||||||||||  |||||| |||||||||||||||    
T  18654042 caggctgtttaggtgattctttccggacgatttctttacccatgacctctagcaagtcatgtaatgt 18654108  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 5089533 - 5089585
Alignment:
Q  165 gattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 217  Q
    ||||||| |||||||||||||||||||||    ||||||| ||||||||||||    
T  5089533 gattcttttcgaacaatttctttacccatgatttctatcaggtcatgtaatgt 5089585  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 217
Target Start/End: Complemental strand, 615468 - 615346
Alignment:
Q  95 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 194  Q
    |||||||| ||||||||| | ||| ||||||    ||||||| | ||| || ||||| || ||||  ||||||||||||| |||||||||||| |||||     
T  615468 attttcttgtaaaacttgaattatatctttagaagaccataaccgacttcgcttcccgggatcttcgggtgattcttgtctaacaatttctttccccata 615369  T
Q  195 tcctctatcaagtcatgtaatgt 217  Q
    ||||||| ||| |||||||||||    
T  615368 tcctctaccaaatcatgtaatgt 615346  T

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Target: scaffold1870 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 401 - 337
Alignment:
Q  153 ggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 217  Q
    |||||||| || ||||||||||| || | |||||||||||| |||||||| ||||||||||||||    
T  401 ggctctttaggcgattcttgtcgtacgacttctttacccatgtcctctataaagtcatgtaatgt 337  T

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Target: scaffold0419 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 9119 - 9055
Alignment:
Q  153 ggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 217  Q
    |||||||| || ||||||||||| || | |||||||||||| |||||||| ||||||||||||||    
T  9119 ggctctttaggcgattcttgtcgtacgacttctttacccatgtcctctataaagtcatgtaatgt 9055  T

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Target: scaffold0349 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 2098 - 2162
Alignment:
Q  150 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaa 214  Q
    |||||||||||   |||||||||||| || | |||||||||||| ||||||||||||||||||||    
T  2098 ccaggctctttaattgattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaa 2162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 211
Target Start/End: Original strand, 211631 - 211747
Alignment:
Q  95 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 194  Q
    |||||| |||||||| || | ||| |||| |  ||||||||||||||| ||||| ||||| | ||  ||||||||||||| |||||||||||| |||||     
T  211631 attttcctctaaaacgtgcattatatcttcagagaaccataatctactgcgttttccaggattttcaggtgattcttgtctaacaatttctttccccata 211730  T
Q  195 tcctctatcaagtcatg 211  Q
    || |||| ||| |||||    
T  211731 tcttctaccaaatcatg 211747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 215
Target Start/End: Original strand, 238363 - 238495
Alignment:
Q  84 ttactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatt- 182  Q
    |||||||||  |||||||||||||||||| | ||| ||||||  | ||||||| ||||| ||||| ||| | | ||| ||||| ||| ||| |||||||     
T  238363 ttactcaccgtattttcttctaaaacttgaattatatctttagaggaccataacctactgcgttttccaagatttttaggtgaatctcgtctaacaattc 238462  T
Q  183 tctttacccatctcctctatcaagtcatgtaat 215  Q
     |||| ||||| ||||||| ||| |||||||||    
T  238463 actttccccatatcctctaccaaatcatgtaat 238495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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