View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1568-INSERTION-3 (Length: 802)
Name: NF1568-INSERTION-3
Description: NF1568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1568-INSERTION-3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 744; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 744; E-Value: 0
Query Start/End: Original strand, 8 - 802
Target Start/End: Original strand, 28550340 - 28551134
Alignment:
| Q |
8 |
tagttgtccacgaagggagtccatggaccatccacatttgatgtaaagatacgatgaatttataagtctcccacttataaactattcaacctccactttt |
107 |
Q |
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| T |
28550340 |
tagttgtccacgaagggagtccatggaccatccacatttgatgtaaagatacgatgaatttataagtctcccacttataagctattcaacctccactttt |
28550439 |
T |
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| Q |
108 |
tcaagcaatgtaagacttccaacttacacttgttacttttgctatcatattgaatggatatgtggttagtttttggtgcggacatggttgcggctgctgt |
207 |
Q |
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| T |
28550440 |
tcaagcaatgtaagacttccaacttacacttgttactgttgctatcatattgaatggatatgtggttagtttttggtgcggacatggttgcggctgctgt |
28550539 |
T |
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| Q |
208 |
tttgtgtctagctttcaactgatagtttagtttagagtagcttttggtgaggtaagggaagggagtaaatgtgttttggtttctgttggtattttggtac |
307 |
Q |
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| T |
28550540 |
tttgtgtctagctttcaactgatagtttagtttagagtagcttttggtgaggtaagggaagggagtaaatgtgttttggtttctgttggtattttggtac |
28550639 |
T |
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| Q |
308 |
acgtagcagaggagttacttttggtgtccctggagtattactttttggctttatcctcttaatgcagttttgcaatggtttagataaaatatttttgctt |
407 |
Q |
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| T |
28550640 |
acgtagcagaggagttacttttggtgtccctggagtattactttttggctttatcctcttaatgcagttttgcaatggtttagataaaatatttttactt |
28550739 |
T |
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| Q |
408 |
nnnnnnnnnggattactgctctaaactgaaagcttaatcaatactttaaaagacaaaacaccatataattatcatttactgcaatactttaaaagactat |
507 |
Q |
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| T |
28550740 |
aaaaaaaaagaattactgctctaaactgaaagcttaatcaatactttaaaagacaaaacaccatataattatcatttactgcaatactttaaaagactat |
28550839 |
T |
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| Q |
508 |
tgtatttctcaatatatacccataagactagaaaactgcaagccatgcacatgcaccgtcccaacaaaaaggaaagtgaagtattattgatgtttaaaaa |
607 |
Q |
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| T |
28550840 |
tgtatttctcaatatatacccataagactagaaaactgcaagccatgcacatgcaccgtcccaacaaaaaggaaagtgaagtattattgatgtttaaaaa |
28550939 |
T |
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| Q |
608 |
tcacaaggttcatgccatattaaacacatttcaataaaactgaattaatgtgctagagactctatctcatcttcacgccaattgcgaatttcctctaaga |
707 |
Q |
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| T |
28550940 |
tcacaaggttcatgccatattaaacacatttcaataaaactgaattaatgtgctagagaatctatctcatcttcacgccaattgcgaatttcctctaaga |
28551039 |
T |
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| Q |
708 |
tcccagatggttgtcttgttggatcgttcgtagactcattcttgcacataagacatgatctcttttcacaggtggtaatcttacacgagatattc |
802 |
Q |
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| T |
28551040 |
tcccagatggttgtcttgttggatcgttcgtagactcattcttgcacataagacatgatctcttttcacaggtgataatcttacacgagatattc |
28551134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 7480297 - 7480354
Alignment:
| Q |
82 |
ttataaactattcaacctccactttttcaagcaatgtaagacttccaacttacacttg |
139 |
Q |
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||||||| | || |||||||||||||||||||| ||| ||||| ||||||||||||| |
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| T |
7480297 |
ttataaagtgttaaacctccactttttcaagcattgttggactttcaacttacacttg |
7480354 |
T |
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