View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1568-INSERTION-4 (Length: 484)
Name: NF1568-INSERTION-4
Description: NF1568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1568-INSERTION-4 |
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Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 8 - 435
Target Start/End: Complemental strand, 29240509 - 29240090
Alignment:
| Q |
8 |
agtttgacagtaaacatttaaagattgaaaattacagattgttagagaatagagaatataaagatatgtaccactcctcatccttatgagcattgaaata |
107 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29240509 |
agtttgacagtaaacatttaaagattgaaaactacagattgttagagaatagagaatataaagatatgtatcactcctcatccttatgagcattgaaata |
29240410 |
T |
|
| Q |
108 |
agctcttttttgtgtagaaatatactctgatttgtgttgttgatacctagaaaaatcaatcagaagtcatttgtcaatgaagatatgaaaatttcttaca |
207 |
Q |
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|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29240409 |
agctcttttttgtgtagaaatatactctgatttgtattgttgatacctagaaaaatcaatcagaagtcatttgtcaatgaagatatgaaaatttcttaca |
29240310 |
T |
|
| Q |
208 |
taactcgaactctcagacataatgcgaaagattattttccacaacttacctatattctgcttcagttggtagcatatcaatatatcatcctcaagctcct |
307 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
29240309 |
taactcgaactctcagacatagtgcaaaagattattttccacaacttacctatgttctgcttcagttggtagcat--------atcatcctcaagctcct |
29240218 |
T |
|
| Q |
308 |
gaatgaattgtttataggacatcaacccttctctaaaagaggtcataattatactaatgttaacatgtagttccagaaagatcaattatcagacagaagt |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
29240217 |
gaatgaattgtttataggacatcaacccttctctaaaagaggtcataattatactaatgttaacatgtagttccagaaagatcgattatcagaaagaagt |
29240118 |
T |
|
| Q |
408 |
aaaataaagacagcttagaatcattaaa |
435 |
Q |
| |
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|||||||||||||||||||||||||||| |
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|
| T |
29240117 |
aaaataaagacagcttagaatcattaaa |
29240090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 8 - 435
Target Start/End: Complemental strand, 16828045 - 16827626
Alignment:
| Q |
8 |
agtttgacagtaaacatttaaagattgaaaattacagattgttagagaatagagaatataaagatatgtaccactcctcatccttatgagcattgaaata |
107 |
Q |
| |
|
||||| |||| |||||||||||||||||||| |||||| |||| | || |||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
16828045 |
agttttacaggaaacatttaaagattgaaaactacagactgttttataacagagaatataaagatacgtaccactcctcatccttatgagcactgaaata |
16827946 |
T |
|
| Q |
108 |
agctcttttttgtgtagaaatatactctgatttgtgttgttgatacctagaaaaatcaatcagaagtcatttgtcaatgaagatatgaaaatttcttaca |
207 |
Q |
| |
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||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16827945 |
agctcttttttgtgtagaaatatactctgatttgtattcttgatacctagaaaaatcaatcagaagtcatttgtcaatgaagatatgaaaatttcttaca |
16827846 |
T |
|
| Q |
208 |
taactcgaactctcagacataatgcgaaagattattttccacaacttacctatattctgcttcagttggtagcatatcaatatatcatcctcaagctcct |
307 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||| |
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|
| T |
16827845 |
taactcaaactctcagacataatgcaaaagattattttccacaacttacctacgttctgcttcagttggtag--------tatatcatcctccagctcct |
16827754 |
T |
|
| Q |
308 |
gaatgaattgtttataggacatcaacccttctctaaaagaggtcataattatactaatgttaacatgtagttccagaaagatcaattatcagacagaagt |
407 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16827753 |
gaatgaattgtttataggacatcaacccttctctaaaacaggtcataattatactaatgttaacatgtagttccagaaagatcaattatcagacagaagt |
16827654 |
T |
|
| Q |
408 |
aaaataaagacagcttagaatcattaaa |
435 |
Q |
| |
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|||||||||||||||||||||||||||| |
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|
| T |
16827653 |
aaaataaagacagcttagaatcattaaa |
16827626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 846769 - 846822
Alignment:
| Q |
288 |
tatatcatcctcaagctcctgaatgaattgtttataggacatcaacccttctct |
341 |
Q |
| |
|
||||||||| ||||||||||| |||||||| |||||||||||||| || ||||| |
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|
| T |
846769 |
tatatcatcttcaagctcctggatgaattgcttataggacatcaaaccctctct |
846822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 163
Target Start/End: Original strand, 846564 - 846651
Alignment:
| Q |
76 |
taccactcctcatccttatgagcattgaaataagctcttttttgtgtagaaatatactctgatttgtgttgttgatacctagaaaaat |
163 |
Q |
| |
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|||||||| ||||||| || | |||||||||||||| |||||| |||| |||||||||||| |||| | ||| || |||||||||| |
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| T |
846564 |
taccactcagcatccttgtgggtattgaaataagctcgtttttgggtagtaatatactctgacttgtactcttggtatctagaaaaat |
846651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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