View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1568-INSERTION-5 (Length: 669)
Name: NF1568-INSERTION-5
Description: NF1568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1568-INSERTION-5 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 7 - 638
Target Start/End: Complemental strand, 24482966 - 24482316
Alignment:
| Q |
7 |
actagacatatatgggcggaacttaactcaacttccttgtaacactactacatatataactatcagtaacattgaaccggtagtatccatagaaatgttg |
106 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
24482966 |
actagacatatatgggtggaacttaactcaacttccttgtaacactactacatatataactatcaataacattgaaccggtaatatccatagaaatgtta |
24482867 |
T |
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| Q |
107 |
ctatttaatatccatagctattggttatgtagtgagaagactaataaatgtagagcaaaatttacaagtagacacactagtggnnnnnnnnnnnnctcat |
206 |
Q |
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| T |
24482866 |
ctatttaatatccatagctattggttatgtagtcagaagactaataaatgtagagcaaaatttacaagtagacacactagtggaaaaaaaaaa--ctcat |
24482769 |
T |
|
| Q |
207 |
gcaaaaatatttgatgaagaggtaatattgttgttgtgttatgcaatttttgtcttgttgtctatgtttggactcgtgctagctgttgtatcagagcaac |
306 |
Q |
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| T |
24482768 |
gcaaaa-tatttgatgaagaggtaatattgttgctgtgttatgcaatttttgtcttcttgtctatgtttggactcgtgctaactgttgtatcatagcaac |
24482670 |
T |
|
| Q |
307 |
attagttcttagactactttttctttgagatgttactgtgaagatcagaacctaagttttgtttgttttaataaaattgtgattttgatcaatcttgtta |
406 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
24482669 |
attagtttttagactactttttctttgagatgttactgtgaagatcagaacctaagttttgtttgtttcaataaaattgtgattttgatcaatcttgtta |
24482570 |
T |
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| Q |
407 |
tta---ttatagggtaatgacattcttcaattggat-------------------tgattcttgtcatgagtatctcacagtgaaaaaagtgaagcaaca |
484 |
Q |
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| T |
24482569 |
ttattattatagggtaatgacattcttcaattggattggctgtccaatattgtgatgattcttgtgatgagtatctcacagtgaaaaaagtgaagcaaca |
24482470 |
T |
|
| Q |
485 |
accatcatcatcgatcaacaaggaggatttggtgctccttgaaagcagtagttcacccactggtggaaagaccgcaatgagacgtacacactccaagcgt |
584 |
Q |
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| T |
24482469 |
accatcatcatcggtcaacaaggaggatttggtgctccttgaaagcagtagttcacccactggtggaaagactacaatgagacgtacacactccaagcgt |
24482370 |
T |
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| Q |
585 |
ccatgtcatgaacctgcagcttcctcgttcaaccatgcaactcatttctcccat |
638 |
Q |
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| T |
24482369 |
ccatgtcatgaacctgcagcttcctcgttcaaccatgcaactcatttctcccat |
24482316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 148; Significance: 9e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 286 - 639
Target Start/End: Original strand, 14150239 - 14150612
Alignment:
| Q |
286 |
tagctgttgtatcagagcaacattagttcttagactactttttctttgagatgttactgtgaagatcagaacctaagttttgtttgttttaataaaattg |
385 |
Q |
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||||||||||||||||| |||||| ||| ||||||||||||| |||| || ||||| | ||| |||||||||||||||| ||||||| |||||||| || |
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| T |
14150239 |
tagctgttgtatcagagaaacattggtttttagactacttttgctttaaggtgttagtatgaggatcagaacctaagtt--gtttgttataataaaagtg |
14150336 |
T |
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| Q |
386 |
tgattttgatcaatcttgttattattatagggtaatgacattcttcaattggattg--------------------attcttgtcatgagtatctcacag |
465 |
Q |
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| T |
14150337 |
tgattttgatcaatcttgttattattacacggcaatgacattcttcaattggattggttgtccaatattgtggatgattcttgtgatgagaatctcacag |
14150436 |
T |
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| Q |
466 |
tgaaaaaagtgaagcaacaaccatcatcatcgatcaacaaggaggatttggtgctccttgaaagcagtagttcacccactggtggaaagaccgcaatgag |
565 |
Q |
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| T |
14150437 |
tgaaaaaagtggagcaacaaccatcatcatcggtcaacaaggaggattttgtgctccttgaaagcagtagttcacctgctcatgaaaagaccacaatgag |
14150536 |
T |
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| Q |
566 |
acgtacacactccaagcgtccatgtcatg-aacctgcag-cttcctcgttcaaccatgcaactcatttctcccatt |
639 |
Q |
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| T |
14150537 |
acgtacacgcaccaagcgtccacatcttgcaaccttcagcccacctcgttcaaccatgcaacccatttctcccatt |
14150612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 320 - 669
Target Start/End: Complemental strand, 14151402 - 14151032
Alignment:
| Q |
320 |
ctactttttctttgagatgttactgtgaagatcagaacctaagttttgtttgttttaataaaattgtgattttgatcaatcttgttattattatagggta |
419 |
Q |
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| T |
14151402 |
ctacttttgctttgaggtgttactataaagatcagaacctaagttttgtctattttaataaaagtgtgattttgatcaatcttgttattactacagggca |
14151303 |
T |
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| Q |
420 |
atgacattcttcaattggattg-------------------attcttgtcatgagtatctcacagtgaaaaaagtgaagcaacaaccatcatcatcgatc |
500 |
Q |
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| T |
14151302 |
atgacattctttaattgttttgttgtccaatattgtggatgattcttgagatgagaatctcactgtgaaaaaagtggagcaacaaccatcatcatcagtc |
14151203 |
T |
|
| Q |
501 |
aacaaggaggatttggtgctccttgaaagcagtagttcacccactggtggaaagaccgcaatgagacgtacacactccaagcgtccatgtcatg-aacct |
599 |
Q |
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||||||||||||| ||||||| |||||||||||||||||||||| | ||||||| |||||| |||||||| ||||||||||||| ||| || || || |
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| T |
14151202 |
tacaaggaggattttgtgctccatgaaagcagtagttcacccactcataaaaagaccacaatgatacgtacacgctccaagcgtccacgtcctgcaagct |
14151103 |
T |
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| Q |
600 |
gcagcttcctcgttcaaccatgcaactcatttctcccatt--ctctttcataggggagaatatgcagaatag |
669 |
Q |
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| T |
14151102 |
tcagc-ccctcgttcaaccatgcaactcatttctccaatttcctcttttgtaggggagaatatgcagaatag |
14151032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 9e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 440 - 669
Target Start/End: Original strand, 52421838 - 52422071
Alignment:
| Q |
440 |
tgattcttgtcatgagtatctcacagtgaaaaaagtgaagcaacaaccatcatcatcgatcaacaaggaggatttggtgctccttgaaagcagtagttca |
539 |
Q |
| |
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||||||| || ||||| || | ||| ||||||||||| ||||||| ||||||||||| |||||||||||||||| ||||||| | |||||| ||||||| |
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| T |
52421838 |
tgattctcgtgatgagaatattacaatgaaaaaagtggagcaacatccatcatcatcagtcaacaaggaggattttgtgctccctaaaagcaatagttca |
52421937 |
T |
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| Q |
540 |
cccactggtggaaagaccgcaatgagacgtacacactccaagcgtccatgtcatg-aacctgcagcttcc-tcgttcaaccatgcaactcatttctccca |
637 |
Q |
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| T |
52421938 |
cccacttgtgaaaagaccacagtgagacgtacacgctccaagcgtccacgtcttgcaaccttcagctcccatcattcaaccatgcaactcatttcttcca |
52422037 |
T |
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| Q |
638 |
--ttctctttcataggggagaatatgcagaatag |
669 |
Q |
| |
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| T |
52422038 |
cttcctcttttgtaggggagaatatgcaggatag |
52422071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 372 - 407
Target Start/End: Original strand, 42713933 - 42713968
Alignment:
| Q |
372 |
ttttaataaaattgtgattttgatcaatcttgttat |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
42713933 |
ttttaataaaattgtgattttgatcaatcttgttat |
42713968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 273
Target Start/End: Original strand, 27968899 - 27968967
Alignment:
| Q |
202 |
ctcatgcaaaaatatttgatgaagaggtaatattgttgttgtgttatgcaatttttgtcttgttgtctatgt |
273 |
Q |
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|||||||| |||||| |||||||||||| || ||||||||||| |||| ||||| ||||||||||||||| |
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| T |
27968899 |
ctcatgcagaaatatgtgatgaagaggtgat---gttgttgtgttctgcagtttttctcttgttgtctatgt |
27968967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 23263803 - 23263863
Alignment:
| Q |
54 |
ctacatatataactatcagtaacattgaaccggtagtatccatagaaatgttgctatttaa |
114 |
Q |
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|||||||||||||||| ||||||||||||| |||| | | |||||||||| |||||||| |
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| T |
23263803 |
ctacatatataactattagtaacattgaacaggtaagcttcttagaaatgttactatttaa |
23263863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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