View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15680_high_11 (Length: 347)
Name: NF15680_high_11
Description: NF15680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15680_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 334
Target Start/End: Complemental strand, 7645552 - 7645236
Alignment:
| Q |
19 |
agtgacaaacctctccatcttaaaatatttaaaattgttgtattctcaagattgaattcaactcaggacctctaaatatacggaaagatattccttacca |
118 |
Q |
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| T |
7645552 |
agtgacaaacctctcaatcttaaaatattttaaattgttgtaatctcgagattgaattcaactcaggatctctagatatacggaaagagattccttacca |
7645453 |
T |
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| Q |
119 |
tctcatccaaatgttatattataatacattatgaccaatgcacnnnnnnnnnnnnntacctatcattcaagtattataaagcattatgaccaagtatgga |
218 |
Q |
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| T |
7645452 |
tctcatccaaatgttatattataatacattatgaccaatgcacaaaaaataaaaaatacctatcattcaagtattataaagcattatgaccaagtatgga |
7645353 |
T |
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| Q |
219 |
caaaatactcataggtaagcaaatatgctcaacaatcaaactccataaattataccta-cattcaagatatatgaaaagtcaaaataatattacatttac |
317 |
Q |
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||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7645352 |
caaaataatcttaggtaagcaaatatgctcaacaatcaaactccataaattatacctatcattcaagatatatggaaagtcaaaataatattacatttac |
7645253 |
T |
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| Q |
318 |
gtatgacctaacctgtt |
334 |
Q |
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|||||||| ||||||| |
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| T |
7645252 |
atatgacctgacctgtt |
7645236 |
T |
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