View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15680_high_14 (Length: 290)
Name: NF15680_high_14
Description: NF15680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15680_high_14 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 359530 - 359801
Alignment:
| Q |
1 |
ttcattatccgagcatcagaagtttctttcgaagtttccaaaagaatatccaagagaagatttatagaccctctccttgtggcataattaggagacttca |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
359530 |
ttcattatccgagcatcagaagtttcttttgaagtttccaaaagaatatccaagagaagatttatagaccctctccttgtggcataattaggagacttca |
359629 |
T |
|
| Q |
101 |
agagattctcattgtatagatcaaagaacacatcacagtgtgttttcaaatactcagagaccacattaacatgtttagtgagaaggtcctttaatgtcga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
359630 |
agagattctcattgtatagatcaaagaacacatcacagtgagttttcaaatactcagagaccacattaacatgtttagtgagaagttcctttaatgtaga |
359729 |
T |
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| Q |
201 |
aaatgcatcatatgctacatcgaagttaggcaaatctacatatttaaagaacagtccaaatcttggagattc |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
359730 |
aaatgcatcatatgctacatcgaagttaggcaaatctacatatttaaagaacagcccaaatcttggagattc |
359801 |
T |
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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 7111110 - 7111056
Alignment:
| Q |
199 |
gaaaatgcatcatatgctacatcgaagttaggcaaatctacatatttaaagaaca |
253 |
Q |
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|||||||||||| |||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
7111110 |
gaaaatgcatcagatgctacatcaaagttaggcaactctacatatttaaagaaca |
7111056 |
T |
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