View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15680_high_4 (Length: 542)
Name: NF15680_high_4
Description: NF15680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15680_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 521
Target Start/End: Complemental strand, 7149237 - 7148717
Alignment:
| Q |
1 |
acactcacactctcactctcttcatgtcatcatcacatgaacnnnnnnnccatcaccgccatcacatataatgaatcaaaatagcaccatgattcttcca |
100 |
Q |
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| T |
7149237 |
acactcacactctcactctcttcatgtcatcatcacatgaacaaaaaaaccatcaccgccatcacatatcatgaatcaaaatagcaccatgattcttcca |
7149138 |
T |
|
| Q |
101 |
ttaccctttcttcctgaagaactcattcttgaaatcctcacaaaacttccaataaaatctctattacgtttcaggtgtgtatgcaaatcatggttacaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7149137 |
ttaccctttcttcctgaagaactcattcttgaaatcctcataaaacttccaataaaatctctattacgtttcaggtgtgtatgcaaatcatggttacaca |
7149038 |
T |
|
| Q |
201 |
taatttccaatccttacttcatnnnnnnncaacttcacttttcaacacaaaacactcacttcacaaccaatcatagaattatattgagtgctactacagc |
300 |
Q |
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| T |
7149037 |
taatttccaatccttacttcataaaaaaacaacttcacttttcaacacaaaacactcacttcacaaccaatcatagaatcatattgagtgctactacagc |
7148938 |
T |
|
| Q |
301 |
tgaatttcacctcaaatcttgttctataacttctcttttcaataacccatcaacagtttctgaggaccttaactaccctgttaagaacaagtttcgccat |
400 |
Q |
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| T |
7148937 |
tgaatttcacctcaaatcttgttctataacttctcttttcaataacccatcaacagtttctgatgaccttaactaccctgttaagaacaagtttcgccat |
7148838 |
T |
|
| Q |
401 |
gatggtattgttggttcttgtaatggattactttgttttgctataaaaggtgattgtgttcttctttggaacccttcaataagggtctctaaaaagtcac |
500 |
Q |
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| T |
7148837 |
gatggtattgttggttcttgtaatggattactttgttttgctataaaaggtgattgtgttcttctttggaacccttcaataagggtctctaaaaagtcac |
7148738 |
T |
|
| Q |
501 |
cacctttagggaataattgga |
521 |
Q |
| |
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| T |
7148737 |
cacctttagggaataattgga |
7148717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 375 - 517
Target Start/End: Original strand, 13093202 - 13093335
Alignment:
| Q |
375 |
accctgttaagaacaagtttcgccatgatggtattgttggttcttgtaatggattactttgttttgctataaaaggtgattgtgttcttctttggaaccc |
474 |
Q |
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||||| ||||| |||||||||| |||||||||||||||||||||||||||| || |||| ||| || ||||||||||||| |||||||||| |
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| T |
13093202 |
accctattaaggacaagtttcgtgatgatggtattgttggttcttgtaatggcttgctttttttggc---------tgattgtgttcttatttggaaccc |
13093292 |
T |
|
| Q |
475 |
ttcaataagggtctctaaaaagtcaccacctttagggaataat |
517 |
Q |
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| T |
13093293 |
ttcaacaagggtttagaaaaaatcacaacctttggagaataat |
13093335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 410 - 442
Target Start/End: Original strand, 27617902 - 27617934
Alignment:
| Q |
410 |
gttggttcttgtaatggattactttgttttgct |
442 |
Q |
| |
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||||||||||| ||||||||||||||||||||| |
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| T |
27617902 |
gttggttcttgcaatggattactttgttttgct |
27617934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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