View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15680_high_6 (Length: 432)
Name: NF15680_high_6
Description: NF15680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15680_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 20 - 421
Target Start/End: Complemental strand, 7854510 - 7854109
Alignment:
| Q |
20 |
gctcggtctcttgtaactgcgattttgtcatttcaagattttcagaatattttgacagatccacaattgccttctctttctctaatctcaattcctcaaa |
119 |
Q |
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| T |
7854510 |
gctcggtctcttgtaactgcaattttgtcatttcaagattttcagaatattttgacagatccacaattgccttctctttctctaatctcaattcctcaaa |
7854411 |
T |
|
| Q |
120 |
gtcctccatggagaacttttgtgacgtgacatttgattcataacttgatgtcaaatttccatcatcaggaacctcaggattagagcagggattgagaata |
219 |
Q |
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| T |
7854410 |
gtcctccatggagaacttttgtgacgtgacatttgattcataacttgatgtcaaatttccatcatcaggaacctcaggattagagcagggattgagaata |
7854311 |
T |
|
| Q |
220 |
tgagaatgaccattttgatatctctctcccgacgaattttcttgaactaacttattttcaggcagagcaatcttatctatgcaatcaggactgttagttt |
319 |
Q |
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| T |
7854310 |
tgagaatgaccattttgatatctctctcccaacgaattttcttgaactaacttattttcaggcagagcaatcttatctatgcaatcaggactgttagttt |
7854211 |
T |
|
| Q |
320 |
cagtttccatacccttataaccaaggatattaaatctgaattcacttgttttagccaagaaatgagacagatcaagaacaaactgtagcaaacttgcttc |
419 |
Q |
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| T |
7854210 |
cagtttccatacccttataaccaaggatattaaatctgaattcacttgttttagccaagaaatgagacagatcaagaacaaactgtagcaaacttgcttc |
7854111 |
T |
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| Q |
420 |
at |
421 |
Q |
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| T |
7854110 |
at |
7854109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 172 - 409
Target Start/End: Complemental strand, 52979184 - 52978947
Alignment:
| Q |
172 |
aaatttccatcatcaggaacctcaggattagagcagggattgagaatatgagaatgaccattttgatatctctctcccgacgaattttcttgaactaact |
271 |
Q |
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||||||||||||||||||||||| |||| ||| |||||||| |||| | ||| ||||||||||||||| ||||| || ||||| ||||||||||||| |
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| T |
52979184 |
aaatttccatcatcaggaacctcgggatcagaacagggattaagaacgcgggaacaaccattttgatatctttctccagatgaattgtcttgaactaact |
52979085 |
T |
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| Q |
272 |
tattttcaggcagagcaatcttatctatgcaatcaggactgttagtttcagtttccatacccttataaccaaggatattaaatctgaattcacttgtttt |
371 |
Q |
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| T |
52979084 |
tattttcaggcaaagcaatcttatctatgcaatcgagactgttagtttcggtttctgtacccttgtatccaaggacgttaaatctgagttcacttgcctt |
52978985 |
T |
|
| Q |
372 |
agccaagaaatgagacagatcaagaacaaactgtagca |
409 |
Q |
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| T |
52978984 |
agccaaaacataagaaaggtcaagaacgaactgtagca |
52978947 |
T |
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