View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15680_low_1 (Length: 713)

Name: NF15680_low_1
Description: NF15680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15680_low_1
NF15680_low_1
[»] chr2 (9 HSPs)
chr2 (105-701)||(7352695-7353291)
chr2 (111-304)||(7353521-7353713)
chr2 (1-55)||(7352591-7352645)
chr2 (217-284)||(7336095-7336162)
chr2 (211-278)||(7365200-7365266)
chr2 (245-302)||(7370316-7370371)
chr2 (254-304)||(7373127-7373176)
chr2 (623-695)||(7908738-7908809)
chr2 (264-295)||(7332107-7332138)
[»] scaffold0041 (1 HSPs)
scaffold0041 (217-286)||(55201-55270)
[»] chr7 (1 HSPs)
chr7 (217-286)||(40917825-40917894)
[»] chr6 (1 HSPs)
chr6 (235-286)||(18499263-18499314)


Alignment Details
Target: chr2 (Bit Score: 573; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 105 - 701
Target Start/End: Original strand, 7352695 - 7353291
Alignment:
Q  105 tgtaagattgaaattttaccacaactgcaaataattttacaattcccattaaaataaagcaagaatcggttctgttgttccaacaagaagaagccagtgt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7352695 tgtaagattgaaattttaccacaactgcaaataattttacaattcccattaaaataaagcaagaatcggttctgttgttccaacaagaagaagccagtgt 7352794  T
Q  205 attatcaggtcaaagaagcattctttgttcagttgttcagattcaattcaactaactaatccattcatttacaaccatttgagtaagaaacaatctctga 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7352795 attatcaggtcaaagaagcattctttgttcagttgttcagattcaattcaactaactaatccattcatttacaaccatttgagtaagaaacaatctctga 7352894  T
Q  305 tttctgaacacaaacaatagcatcaaaatcacatttcaaaagagaaaatccaaacaaaatcagcagcaaccatataagatagtcatagtattttcattcg 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7352895 tttctgaacacaaacaatagcatcaaaatcacatttcaaaagagaaaatccaaacaaaatcagcagcaaccatataagataatcatagtattttcattcg 7352994  T
Q  405 catcattaacagtactaacatcatctcaaggataatctttgtgaagccagcttcccaggccaactcaaaaccatgaatgactcttcaccattcagcagca 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7352995 catcattaacagtactaacatcatctcaaggataatctttgtgaagccagcttcccaggccaactcaaaaccatgaatgactcttcaccattcagcagca 7353094  T
Q  505 tttcacctcccctccattaaaatccctaactttcccgtcgcttgaactaaacagatccttagaagctacattcatattcaatttgataacccaactaagg 604  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||    
T  7353095 tttcacctcccctccattaaaatccctcactttcccgtcgcttgaactaaacagatccttagaagctacattcatattcaatttgataacccggctcagg 7353194  T
Q  605 tttggcctaaactctaagcacccatccttattatgtgacaaactctccataagtagcctttcattcttcttggacctttccatttctaaatattctt 701  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7353195 tttggcctaaactctaaacacccatccttattatgtgacaaactctccataagtagcctttcattcttcttggacctttccatttctaaatattctt 7353291  T

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Target: chr2; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 111 - 304
Target Start/End: Original strand, 7353521 - 7353713
Alignment:
Q  111 attgaaattttaccacaactgcaaataattttacaattcccattaaaataaagcaa--gaatcggttctgttgttccaacaagaagaagccagtgtatta 208  Q
    ||||||||||||||||||| | |||||||||||||||||||| ||||||| |  ||  |||||||||| ||||||||||||||||||||||| |||||||    
T  7353521 attgaaattttaccacaacggtaaataattttacaattcccactaaaatatataaaaagaatcggttcggttgttccaacaagaagaagccaatgtatta 7353620  T
Q  209 tcaggtcaaagaagcattctttgttcagttgttcagattcaattcaactaactaatccattcatttacaaccatttgagtaagaaacaatctctga 304  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||| |||| ||||||||| |||| ||||||  ||| ||||||||||||    
T  7353621 tcaggtcaaagaagcattctttgttcagttgtt-acattcaattcaactaattaat-cattcatttgcaacaatttgaccaag-aacaatctctga 7353713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 7352591 - 7352645
Alignment:
Q  1 taagcctataagtttaagaagtgaacacacataaggaataagtacaagttattat 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7352591 taagcctataagtttaagaagtgaacacacataaggaataagtacaagttattat 7352645  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 7336095 - 7336162
Alignment:
Q  217 aagaagcattctttgttcagttgttcagattcaattcaactaactaatccattcatttacaaccattt 284  Q
    |||||| |||||||||||||||||||  |||| ||||| ||||||||||||||| |||||||||||||    
T  7336095 aagaagtattctttgttcagttgttcgcattcgattcagctaactaatccattcttttacaaccattt 7336162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 211 - 278
Target Start/End: Original strand, 7365200 - 7365266
Alignment:
Q  211 aggtcaaagaagcattctttgttcagttgttcagattcaattcaactaactaatccattcatttacaa 278  Q
    |||||||||||||||| ||| ||||||| || | ||||||||||||||||||| ||||||||||||||    
T  7365200 aggtcaaagaagcatttttt-ttcagttcttaacattcaattcaactaactaacccattcatttacaa 7365266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 7370316 - 7370371
Alignment:
Q  245 attcaattcaactaactaatccattcatttacaaccatttgagtaagaaacaatctct 302  Q
    |||||||||||||||||||||||||||  ||||||||||||| |||||||| ||||||    
T  7370316 attcaattcaactaactaatccattca--tacaaccatttgaataagaaaccatctct 7370371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 254 - 304
Target Start/End: Original strand, 7373127 - 7373176
Alignment:
Q  254 aactaactaatccattcatttacaaccatttgagtaagaaacaatctctga 304  Q
    ||||||||||||||| ||||||||||||||||| |||| ||||||||||||    
T  7373127 aactaactaatccatgcatttacaaccatttgattaag-aacaatctctga 7373176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 623 - 695
Target Start/End: Complemental strand, 7908809 - 7908738
Alignment:
Q  623 cacccatccttatta-tgtgacaaactctccataagtagcctttcattcttcttggacctttccatttctaaat 695  Q
    ||||||||||||||| |||||||||||||  |||| ||| ||| |||| ||||| |||||||||||||||||||    
T  7908809 cacccatccttattaatgtgacaaactct--ataaatagtcttgcatttttcttagacctttccatttctaaat 7908738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 264 - 295
Target Start/End: Original strand, 7332107 - 7332138
Alignment:
Q  264 tccattcatttacaaccatttgagtaagaaac 295  Q
    ||||||||||||||||||||||||||||||||    
T  7332107 tccattcatttacaaccatttgagtaagaaac 7332138  T

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Target: scaffold0041 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 217 - 286
Target Start/End: Original strand, 55201 - 55270
Alignment:
Q  217 aagaagcattctttgttcagttgttcagattcaattcaactaactaatccattcatttacaaccatttga 286  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| || | |||||||||||||||||    
T  55201 aagaagcattctttgttcagttgttcacattcaattcaactaactaacccctccatttacaaccatttga 55270  T

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Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 217 - 286
Target Start/End: Complemental strand, 40917894 - 40917825
Alignment:
Q  217 aagaagcattctttgttcagttgttcagattcaattcaactaactaatccattcatttacaaccatttga 286  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| || | |||||||||||||||||    
T  40917894 aagaagcattctttgttcagttgttcacattcaattcaactaactaacccctccatttacaaccatttga 40917825  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 235 - 286
Target Start/End: Original strand, 18499263 - 18499314
Alignment:
Q  235 agttgttcagattcaattcaactaactaatccattcatttacaaccatttga 286  Q
    ||||||||| ||||||||||||||||||| || | |||||||||||||||||    
T  18499263 agttgttcacattcaattcaactaactaacccctccatttacaaccatttga 18499314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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