View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15680_low_10 (Length: 360)

Name: NF15680_low_10
Description: NF15680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15680_low_10
NF15680_low_10
[»] chr4 (4 HSPs)
chr4 (108-352)||(41136318-41136562)
chr4 (108-139)||(47774071-47774102)
chr4 (108-145)||(28485793-28485830)
chr4 (108-145)||(56446887-56446924)
[»] chr1 (5 HSPs)
chr1 (1-139)||(33090168-33090306)
chr1 (110-145)||(40905821-40905856)
chr1 (112-145)||(9922206-9922239)
chr1 (108-141)||(33138272-33138305)
chr1 (108-136)||(38327138-38327166)
[»] chr8 (3 HSPs)
chr8 (108-139)||(39162253-39162284)
chr8 (108-137)||(6802059-6802088)
chr8 (113-145)||(26413400-26413432)
[»] chr3 (2 HSPs)
chr3 (108-139)||(26599632-26599663)
chr3 (108-139)||(35418067-35418098)
[»] chr6 (1 HSPs)
chr6 (110-138)||(19745337-19745365)
[»] chr5 (1 HSPs)
chr5 (112-144)||(37993622-37993654)


Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 108 - 352
Target Start/End: Complemental strand, 41136562 - 41136318
Alignment:
Q  108 aaatactaacataacaattaacatactaacatctgtcactnnnnnnnnnnnnnnttagttgagcaatgaattggatacaaatataaattactcctacaat 207  Q
    ||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||    
T  41136562 aaatactaacataacaattaacatactaacatctgtcactaaaaaaactaaaaattagttgagcaatgaattggatacaaatataaattactcctacaat 41136463  T
Q  208 aaaaactctaaattttagcttctagtaagaattccttctagaggtaaagcaattaaacatataaaaatcaattttatgtgtattaaaacacttttacaca 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41136462 aaaaactctaaattttagcttctagtaagaattccttctagaggtaaagcaattaaacatataaaaatcaattttatgtgtattaaaacacttttacaca 41136363  T
Q  308 tattatatttgttgttttgtagtgattataaagctatatattctt 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  41136362 tattatatttgttgttttgtagtgattataaagctatatattctt 41136318  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 108 - 139
Target Start/End: Complemental strand, 47774102 - 47774071
Alignment:
Q  108 aaatactaacataacaattaacatactaacat 139  Q
    ||||||||||||||||||||||||||||||||    
T  47774102 aaatactaacataacaattaacatactaacat 47774071  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Original strand, 28485793 - 28485830
Alignment:
Q  108 aaatactaacataacaattaacatactaacatctgtca 145  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  28485793 aaatattaacataacaattaacatactaacatttgtca 28485830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 56446924 - 56446887
Alignment:
Q  108 aaatactaacataacaattaacatactaacatctgtca 145  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  56446924 aaatactaacatatcaattaacatactaacatttgtca 56446887  T

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Target: chr1 (Bit Score: 135; Significance: 3e-70; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 33090306 - 33090168
Alignment:
Q  1 accgcagtataaaagtttttaaatacaatgacattgctcggttgagctaagggattaaaggtgttacggaggtataggtccaaacttcgaatcccaacac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33090306 accgcagtataaaagtttttaaatacaatgacattgctcggttgagctaagggattaaaggtgttacggaggtataggtccaaacttcgaatcccaacac 33090207  T
Q  101 atataggaaatactaacataacaattaacatactaacat 139  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  33090206 atataggaaatactaacataacagttaacatactaacat 33090168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 145
Target Start/End: Original strand, 40905821 - 40905856
Alignment:
Q  110 atactaacataacaattaacatactaacatctgtca 145  Q
    |||||||||||||||||||||||||||||| |||||    
T  40905821 atactaacataacaattaacatactaacatttgtca 40905856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 145
Target Start/End: Original strand, 9922206 - 9922239
Alignment:
Q  112 actaacataacaattaacatactaacatctgtca 145  Q
    |||||||||||||||||||||||||||| |||||    
T  9922206 actaacataacaattaacatactaacatttgtca 9922239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 141
Target Start/End: Complemental strand, 33138305 - 33138272
Alignment:
Q  108 aaatactaacataacaattaacatactaacatct 141  Q
    ||||||||||||||||||||||||||||| ||||    
T  33138305 aaatactaacataacaattaacatactaatatct 33138272  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 136
Target Start/End: Original strand, 38327138 - 38327166
Alignment:
Q  108 aaatactaacataacaattaacatactaa 136  Q
    |||||||||||||||||||||||||||||    
T  38327138 aaatactaacataacaattaacatactaa 38327166  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 108 - 139
Target Start/End: Original strand, 39162253 - 39162284
Alignment:
Q  108 aaatactaacataacaattaacatactaacat 139  Q
    ||||||||||||||||||||||||||||||||    
T  39162253 aaatactaacataacaattaacatactaacat 39162284  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 137
Target Start/End: Original strand, 6802059 - 6802088
Alignment:
Q  108 aaatactaacataacaattaacatactaac 137  Q
    ||||||||||||||||||||||||||||||    
T  6802059 aaatactaacataacaattaacatactaac 6802088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 145
Target Start/End: Complemental strand, 26413432 - 26413400
Alignment:
Q  113 ctaacataacaattaacatactaacatctgtca 145  Q
    ||||||||||||||||||||||||||| |||||    
T  26413432 ctaacataacaattaacatactaacatttgtca 26413400  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 108 - 139
Target Start/End: Original strand, 26599632 - 26599663
Alignment:
Q  108 aaatactaacataacaattaacatactaacat 139  Q
    ||||||||||||||||||||||||||||||||    
T  26599632 aaatactaacataacaattaacatactaacat 26599663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 108 - 139
Target Start/End: Complemental strand, 35418098 - 35418067
Alignment:
Q  108 aaatactaacataacaattaacatactaacat 139  Q
    ||||||||||||||||||||||||||||||||    
T  35418098 aaatactaacataacaattaacatactaacat 35418067  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 138
Target Start/End: Original strand, 19745337 - 19745365
Alignment:
Q  110 atactaacataacaattaacatactaaca 138  Q
    |||||||||||||||||||||||||||||    
T  19745337 atactaacataacaattaacatactaaca 19745365  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 37993622 - 37993654
Alignment:
Q  112 actaacataacaattaacatactaacatctgtc 144  Q
    |||||||||||||||||||||||||||| ||||    
T  37993622 actaacataacaattaacatactaacatttgtc 37993654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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