View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15680_low_15 (Length: 287)
Name: NF15680_low_15
Description: NF15680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15680_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 12 - 284
Target Start/End: Complemental strand, 6677585 - 6677314
Alignment:
| Q |
12 |
agaagaaaactaacacaacaattaacatttgttattnnnnnnntaccacaaatatgttaataacttttttgaaggacgagggtaatacnnnnnnncttnn |
111 |
Q |
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| T |
6677585 |
agaagaaaactaacacaacaattaacatttgttattaaaaaaataccacaaatatgttaataacttttttgaaggacgagggtaatactttttt-cttaa |
6677487 |
T |
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| Q |
112 |
nnnnntaaattatattaatttaatcaagatgatagagtatatcgttataatataaatttcaaatcgcgttnnnnnnntaatcagtttacgaacaaactca |
211 |
Q |
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| T |
6677486 |
aaaaataaattatattaatttaatcaagatgatagagtatatcgttattatataaatttcaaatcgtgttaaaaaaataatcagtttacgaacatactcg |
6677387 |
T |
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| Q |
212 |
caaagtatataccaaagaatatgactatattcaaatgtttgaaatactcatacattttgatccgtaacgatga |
284 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
6677386 |
caaagtatataccaaagaatatgactctattcaaatgtttgaaatactcatacattttgatctgtaatgatga |
6677314 |
T |
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