View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15680_low_16 (Length: 282)
Name: NF15680_low_16
Description: NF15680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15680_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 30 - 245
Target Start/End: Original strand, 29467315 - 29467534
Alignment:
| Q |
30 |
aataatgcaaactagaaagtgcaaaagtcaaatatcct---ccatgctttgttggctggcagtgacagagccacatataagtgaggggatgcagagaaga |
126 |
Q |
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| T |
29467315 |
aataatgcaaactagaaagtgcaaaagtcaaatatcctcctccatgctttgttggctggcagtgacagagccacatataagagaggggatgcagagaaga |
29467414 |
T |
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| Q |
127 |
gaattttcaattgcacatgctgctatattttatttctatttgaacctcctgaattgtttatactgcatctgccataaagttcttgaatcttgcataa-tt |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
29467415 |
gaattttcaattgcacatgctgctatattttatttctatttgaacctcctgaattgtttatactgcatctcgcataaagttcttgaatcttgcataattt |
29467514 |
T |
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| Q |
226 |
gacttgacttgcttttgata |
245 |
Q |
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|||||||||||||||||||| |
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| T |
29467515 |
gacttgacttgcttttgata |
29467534 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 196
Target Start/End: Original strand, 15176122 - 15176182
Alignment:
| Q |
137 |
ttgcacatgctgc-tatattttatttctatttgaacctcctgaattgtttatactgcatct |
196 |
Q |
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||||||||||||| | |||||||||||||||||||| |||| | || |||||| ||||||| |
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| T |
15176122 |
ttgcacatgctgcatgtattttatttctatttgaacgtcctaatttttttatattgcatct |
15176182 |
T |
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