View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15680_low_17 (Length: 276)
Name: NF15680_low_17
Description: NF15680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15680_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 263
Target Start/End: Complemental strand, 48878313 - 48878058
Alignment:
| Q |
8 |
tgatatgaaagcaagtgatacctactattactaatacttcatagaaatatatcatgctaaggaagagggaggcttcatcctgcaaacatgagaaagaaga |
107 |
Q |
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| T |
48878313 |
tgatatgaaagcaagtgatacctactattactaatacttcatagaaatatatcatgctaaggaagagggaggcttcatcctgcaaacatgagaaagaaga |
48878214 |
T |
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| Q |
108 |
ccaattttaatatgatgtaaaataagaactaggaagtactaataagcaatttcatatgcatgtgtttcttcttgctttgagatattgaatataagctgat |
207 |
Q |
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| T |
48878213 |
ccaattttaatatgatgtaaaataagaactaggaagtactaataagcaatttcttatgcttgtgtttcttcttgctttgagatattgaatataagctgat |
48878114 |
T |
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| Q |
208 |
tcaaagcttatgaaagtggaagaaaatattcagcatctcaatggggtgtgtatgtt |
263 |
Q |
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| T |
48878113 |
tcaaagcttatgaaagtggaagaaaatattcagcatctcaatgggatgtgtatgtt |
48878058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 48873199 - 48873122
Alignment:
| Q |
60 |
catgctaaggaagagggaggcttcatcctgcaaacatgagaaagaagaccaattttaa-tatgatgtaaaataagaac |
136 |
Q |
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| T |
48873199 |
catgctgagaaagagggaggctttgttatgcaaacatgagaaagaagaagaattttaagtatgatgtaaaataagaac |
48873122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 48923166 - 48923228
Alignment:
| Q |
53 |
aatatatcatgctaaggaagagggaggcttcatcctgcaaacatgagaaagaagaccaatttt |
115 |
Q |
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| T |
48923166 |
aatatatcatactaatgtagagggaggcttcgttctgcaaacatgagaaggaagaacaatttt |
48923228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 9e-42; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 65 - 250
Target Start/End: Complemental strand, 9578641 - 9578458
Alignment:
| Q |
65 |
taaggaagagggaggcttcatcctgcaaacatgagaaagaagaccaattttaatatgatgtaaaataagaactaggaagtactaataagcaatttcatat |
164 |
Q |
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| T |
9578641 |
taaggaagacggaggcttcattttgcaaacatgagaaggaagaccaaatttaatgtgatgtaaaataggaacttggaagtaacacttagcaatgtctaaa |
9578542 |
T |
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| Q |
165 |
gcatgtgtttcttcttgctttgagatattgaatataagctgattcaaagcttatgaaagtggaagaaaatattcagcatctcaatg |
250 |
Q |
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| T |
9578541 |
ac--gtttatcttcttgctttgaggtatggaatataagctgattcaaagcttatgaaagtggaagaaaatattcagcatttcaatg |
9578458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 66 - 250
Target Start/End: Complemental strand, 9583142 - 9582960
Alignment:
| Q |
66 |
aaggaagagggaggcttcatcctgcaaacatgagaaagaagaccaattttaatatgatgtaaaataagaactaggaagtactaataagcaatttcatatg |
165 |
Q |
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| T |
9583142 |
aaggaagaggaaggcttcattttacaaacatgagaaggaagaccaaatttaatgtgatgtaaaataggaacttggaagtaacacttagcaatgtctaaaa |
9583043 |
T |
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| Q |
166 |
catgtgtttcttcttgctttgagatattgaatataagctgattcaaagcttatgaaagtggaagaaaatattcagcatctcaatg |
250 |
Q |
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| || | ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
9583042 |
c--gtttatcttcttgctttgagatatggaatataagctgattcgaagcttatgaaagtggaagaaaatattcagcatttcaatg |
9582960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 65 - 255
Target Start/End: Complemental strand, 9574074 - 9573880
Alignment:
| Q |
65 |
taaggaagagggaggcttcatcctgcaaacatgagaaagaagaccaattttaatatgatgtaaaataag------aactaggaagtactaataagcaatt |
158 |
Q |
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| T |
9574074 |
taaggaagagggaggcttcagtttgcaaacatgagaaggaagaccaaatttaatgtgatgtaacataaacatagcaacttggaagtaacgattagcaatg |
9573975 |
T |
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| Q |
159 |
tcatatgcatgtgtttcttcttgctttgagatattgaatataagctgattcaaagcttatgaaagtggaagaaaatattcagcatctcaatggggtg |
255 |
Q |
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| T |
9573974 |
tctaaaac--gtgtatcttcttgctttgaggtatggaatataagctgattcaaagcttatgaaagtggaagaaaatattcagcatttcaatggggtg |
9573880 |
T |
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