View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15680_low_2 (Length: 626)
Name: NF15680_low_2
Description: NF15680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15680_low_2 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 475; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 12 - 611
Target Start/End: Original strand, 25812623 - 25813225
Alignment:
| Q |
12 |
ataggttcttcacaatcaattatttcagccactgtgaaacatctatcacaccttgctgccacgtttgataccttcatatgaatttgtgtgatggtaatta |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
25812623 |
ataggttcttcacaatcaattatttcagccactgtgaaacatctatcacaccttgcagccacgtttgataccttcatatgaatttgtgtgagggtaatta |
25812722 |
T |
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| Q |
112 |
ctttgcaagaaaaatccaatgacctcaaaaggtccaacttgtcatgtactataaatattatagagtatagtatctaatatctatccaaaaatgaagaatc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25812723 |
ctttgcaagaaaaatccaatgacctcaaaaggtccaacttgtcatgtactataaatattatagagtatagtatctaatatctatccaaaattgaagaatc |
25812822 |
T |
|
| Q |
212 |
aattcttctaacttcatcatgagtcattggcatattctttgttggtgaatatacaaatgtataaagaccttaaatcaaggtagggtttatttctagaacc |
311 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25812823 |
aattcttctgacttcatcatgagtcattggcatattctttgttggtgaatatacaaatgtataaagaccttaaatcaaggtagggtttatttctagaacc |
25812922 |
T |
|
| Q |
312 |
aaatggacttaaagattagaagatacaaatacataactactaattttgaaatggatggaatttattccc-nnnnnnnnctctgtttcaacttacaagact |
410 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
25812923 |
aaatggacttaaagattagaagatacaaatacagaactactaattttgaattggatggaatttattccctttttttttctctgtttcaacttacaagact |
25813022 |
T |
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| Q |
411 |
ttaatcatatagggaggttaagtgcatgtgattctctaagtatc-ttcagag-nnnnnnnnatactttgcgacgtttgaagacactctcatcaaatcaaa |
508 |
Q |
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| T |
25813023 |
ttaatcatatagggacgttaagtgcatgtgattctctatgtatctttcagagtttttttttattctttgcgacgtttgaaaacattctcatcaaatcaaa |
25813122 |
T |
|
| Q |
509 |
taccgaatttatctgcatgtactacataatttagacatttcaatattgtcaaatacttcaattcatttcaacggttgcaaggaagtaggcataggttcac |
608 |
Q |
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|| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25813123 |
tatcgaatttatctgtatgtaccacataatttagacatttcaatattgtcaaatacttcaattcatttcaacggttgcaaggaagtaggcataggttcac |
25813222 |
T |
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| Q |
609 |
att |
611 |
Q |
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||| |
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| T |
25813223 |
att |
25813225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 70 - 333
Target Start/End: Original strand, 25799866 - 25800122
Alignment:
| Q |
70 |
ccacgtttgataccttcatatgaatttgtgtgatggtaattactttgc-aagaaaaatccaatgacctcaaaaggtccaacttgtcatgtact---ataa |
165 |
Q |
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| T |
25799866 |
ccacatttgataccttcat--gaatttgtg--atggtaaatgctttgctaagaaaaatgagatgacctcaaaaggaccaacttgtcatgtactactataa |
25799961 |
T |
|
| Q |
166 |
atattatagagtatagtatctaatatctatccaaaaatgaagaatcaattcttctaacttcatcatgagtcattggcatattctttgttggtgaatatac |
265 |
Q |
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| T |
25799962 |
atatttaagagtatagtatctaatatctatccaaaaatgaagaatcagttcttcaaacttcatcatgggtcattg------tcattgctggtgaagatac |
25800055 |
T |
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| Q |
266 |
aaatgtataaagaccttaaatcaaggtagggtttatttctagaaccaaatggacttaaagattagaag |
333 |
Q |
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| T |
25800056 |
aaatgaat-tggaccttaaatcgaggtagaatttcttcaaagaatcaaatggacttcaagattagaag |
25800122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 70 - 333
Target Start/End: Complemental strand, 114804 - 114548
Alignment:
| Q |
70 |
ccacgtttgataccttcatatgaatttgtgtgatggtaattactttgc-aagaaaaatccaatgacctcaaaaggtccaacttgtcatgtacta---taa |
165 |
Q |
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|||| |||||||||||||| ||||||||| ||||||| | |||||| ||||||||| |||||||||||||| |||||||||||||||||| ||| |
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| T |
114804 |
ccacatttgataccttcat--gaatttgtg--atggtaaatgctttgctaagaaaaatgtgatgacctcaaaaggaccaacttgtcatgtactactataa |
114709 |
T |
|
| Q |
166 |
atattatagagtatagtatctaatatctatccaaaaatgaagaatcaattcttctaacttcatcatgagtcattggcatattctttgttggtgaatatac |
265 |
Q |
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| T |
114708 |
atatttaagagtatagtatctaatatctatccaaaaatgaagaatcagttcttcaaacttcatcatgggtcattg------tcattgctggtgaagatac |
114615 |
T |
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| Q |
266 |
aaatgtataaagaccttaaatcaaggtagggtttatttctagaaccaaatggacttaaagattagaag |
333 |
Q |
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| T |
114614 |
aaatgaat-tggaccttaaatcgaggtagaatttcttcaaagaatcaaatggacttcaagattagaag |
114548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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