View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15680_low_20 (Length: 242)
Name: NF15680_low_20
Description: NF15680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15680_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 5172551 - 5172372
Alignment:
| Q |
1 |
atcaaactcgatttttaactatatcaaataattcatcagaagttgattctttataactaaaaagaaaacgagtatttttcagcaaaagccacaaacccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||| |||| |
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| T |
5172551 |
atcaaactcgatttttaactatatcaaataattcatcagaagttgattctttataactaaaa-gaaaacgtgtatttttcagcaaaatccacaaagccaa |
5172453 |
T |
|
| Q |
101 |
ccaaaatagctatgaagcaatccctgttactataatgaagacctctaaattggcatattatgtacatatttgttgtctcag |
181 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5172452 |
ccaaaatagctatgaagcaatccctgttactataatgaagacctctaaattggcatattatgtacatatttgttgtctcag |
5172372 |
T |
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