View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15680_low_3 (Length: 608)
Name: NF15680_low_3
Description: NF15680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15680_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 23 - 604
Target Start/End: Complemental strand, 44436904 - 44436321
Alignment:
| Q |
23 |
tcacaatctcttcatctctcctcactggagttcttagagataaatatttttcaagaagcggctttttggaggacaacctcgatctgttacacatagacaa |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
44436904 |
tcacaatctcttcatctctcctcactggagttcttagagataaatatttttcaagaagcggctttttggaggacaacctcgatctgttacacatagagaa |
44436805 |
T |
|
| Q |
123 |
gtatttggagtattgtatcgccgttgtcctttagatatacgtgggaaattggtgaaggaaatggtatcaggtcagacccttggatctggttaacacagta |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||| |
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| T |
44436804 |
gtatttggagtattgtatcgccgttgtcctttagatatacgtgggaaattggtgaaggaaatggcatcaggtcagacccttggatctggtcaacgcagta |
44436705 |
T |
|
| Q |
223 |
tatgcagcctactgccccgagtgtgttatgtgtcatgggagttttgatgataagttgcacactttccttgaatgctctcgttttgttaattgttagaagg |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44436704 |
tatgcagcctactgccccgagtgtgttatgtgtcatgggagttttgatgataagttgcacactttccttgaatgctctcgttttgttaattgttagaagg |
44436605 |
T |
|
| Q |
323 |
aattgcatatgtggactataatcaagcatcactttaccggtaggcaatttttgttttcccatcattttatctattgtgcaggccttg--gtggtgagaaa |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44436604 |
aattgcatatgtggactataatcaagcatcactttaccggtaggcaatttttgttttcccatcattttatctattgtgcaggccttggtgtggtgagaaa |
44436505 |
T |
|
| Q |
421 |
aaatcacgcttctaatctagcctttgaagtatactgttacgcagctgctttaggaggcttcaaatgttagtatggcaaaaagatatatagaggaaaatca |
520 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44436504 |
aaatcacgcttctaatctagcctttgaagtatactgttacgcagctgctttaggaggcttcaaatgttagtatggcaaaaagatatatagaggaaaatca |
44436405 |
T |
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| Q |
521 |
atagagatgtatgtagaattgtggtagagcatcatcctcatagaagatgacattcgcagcaaaaaatacgttcctatgcttctc |
604 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44436404 |
atagagatgtatgtagaattgtggtagagcatcttcctcatagaagatgacattcgcagcaaaaaatacgttcctatgtttctc |
44436321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 2901595 - 2901663
Alignment:
| Q |
23 |
tcacaatctcttcatctctcctcactggagttcttagagataaatatttttcaagaagcggctttttgg |
91 |
Q |
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|||||| |||||| | |||||||||| ||||||| | |||||||||||| | |||||| ||||||||| |
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| T |
2901595 |
tcacaaactcttcctttctcctcactagagttctcaaagataaatatttccctagaagcagctttttgg |
2901663 |
T |
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