View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15680_low_5 (Length: 439)

Name: NF15680_low_5
Description: NF15680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15680_low_5
NF15680_low_5
[»] chr2 (23 HSPs)
chr2 (18-439)||(9329317-9329738)
chr2 (119-318)||(9321810-9322005)
chr2 (107-282)||(9060265-9060440)
chr2 (119-280)||(8572671-8572831)
chr2 (18-279)||(9316740-9317004)
chr2 (18-229)||(12018134-12018342)
chr2 (21-229)||(10348524-10348732)
chr2 (18-229)||(9283394-9283602)
chr2 (46-229)||(10336560-10336740)
chr2 (119-229)||(9292747-9292857)
chr2 (119-222)||(10372701-10372804)
chr2 (18-229)||(9275243-9275452)
chr2 (108-218)||(9357924-9358034)
chr2 (120-234)||(12011808-12011922)
chr2 (93-294)||(7114803-7114998)
chr2 (119-234)||(10353964-10354079)
chr2 (119-267)||(12005347-12005495)
chr2 (120-235)||(7612716-7612831)
chr2 (124-229)||(11986745-11986850)
chr2 (120-243)||(8578731-8578854)
chr2 (120-199)||(9365415-9365494)
chr2 (127-243)||(17565320-17565436)
chr2 (121-196)||(14551140-14551215)
[»] scaffold0667 (1 HSPs)
scaffold0667 (119-229)||(5278-5388)
[»] chr3 (2 HSPs)
chr3 (119-270)||(37463341-37463492)
chr3 (46-238)||(39428633-39428816)
[»] chr5 (1 HSPs)
chr5 (46-236)||(36225494-36225686)
[»] chr4 (2 HSPs)
chr4 (119-234)||(26575698-26575813)
chr4 (93-196)||(561966-562066)
[»] chr8 (1 HSPs)
chr8 (124-229)||(41965942-41966047)
[»] chr1 (4 HSPs)
chr1 (125-214)||(29467060-29467149)
chr1 (119-214)||(29452586-29452681)
chr1 (125-227)||(29424039-29424141)
chr1 (119-227)||(29442581-29442689)


Alignment Details
Target: chr2 (Bit Score: 398; Significance: 0; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 18 - 439
Target Start/End: Original strand, 9329317 - 9329738
Alignment:
Q  18 aaaggatggttgagtggaatcatggatttggttagattaggaagatcgagttggtagagatcggtattgagctgaaggatgaggttgaaattgagggaat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9329317 aaaggatggttgagtggaatcatggatttggttagattaggaagatcgagttggtagagatcggtattgagctgaaggatgaggttgaaattgagggaat 9329416  T
Q  118 tatttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9329417 tatttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcg 9329516  T
Q  218 ggagaggatttccgtgaacaattccggcagaagaacatcacccgccattggaaggaaggaaggttcgttctagggttgtgtggaactgctgcgttttggt 317  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9329517 ggagaggatttccgttaacaattccggcagaagaacatcacccgccattggaaggaaggaaggttcgttctagggttgtgtggaactgctacgttttggt 9329616  T
Q  318 tgatttagtgttttagtttctgttgaagtaagttttctagcgtgcttcacttctagtacccacttattgcaaaaatctcatcaacatcggtttaagccct 417  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9329617 tgatttagggttttagtttttgttgaagtaagttttctagcgtgcttcacttctagtacccacttattgcaaaaatctcatcaacatcggtttaagccct 9329716  T
Q  418 cataatacgcagtgttgattgt 439  Q
    |||||||||||  |||||||||    
T  9329717 cataatacgcacggttgattgt 9329738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 119 - 318
Target Start/End: Original strand, 9321810 - 9322005
Alignment:
Q  119 atttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgg 218  Q
    ||||||||| ||||||||  |||||| ||| |||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||    
T  9321810 atttttgagatgaaggttgatgaagtggtgagaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgg 9321909  T
Q  219 gagaggatttccgtgaacaattccggcagaagaacatcacccgccattggaaggaaggaaggttcgttctagggttgtgtggaactgctgcgttttggtt 318  Q
    ||||||||||||   |||||||||||| || ||||||||| |||||||    ||||||||||||||||||||||||||||||  || |||||||| ||||    
T  9321910 gagaggatttcctccaacaattccggcggaggaacatcactcgccatt----ggaaggaaggttcgttctagggttgtgtggttcttctgcgtttaggtt 9322005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 107 - 282
Target Start/End: Complemental strand, 9060440 - 9060265
Alignment:
Q  107 attgagggaattatttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgatttt 206  Q
    |||||||| |||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||      
T  9060440 attgaggggattatttttgaggtaaaggttagtgaagttgtgagaatcgattaaggatttaagtgattttgaagttgatcggaatcggagaagtgattga 9060341  T
Q  207 accggtaagcgggagaggatttccgtgaacaattccggcagaagaacatcacccgccattggaaggaaggaaggtt 282  Q
    |||||||||||||||| |||||| |  |  | ||||||| ||||||||||| ||||||||||||||||||| ||||    
T  9060340 accggtaagcgggagaagatttcggcaagtatttccggcggaagaacatcagccgccattggaaggaaggagggtt 9060265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 119 - 280
Target Start/End: Complemental strand, 8572831 - 8572671
Alignment:
Q  119 atttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgg 218  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |||| ||||    
T  8572831 atttttgaggtgaaggttggtgaagttgtgggaatcgattatagatttaagtgattttgaagttgatcggaatcggagaagtga-tttactggtatgcgg 8572733  T
Q  219 gagaggatttccgtgaacaattccggcagaagaacatcacccgccattggaaggaaggaagg 280  Q
    |||| |||||| ||||  | ||||| | ||||||||||||||||||||||||||||||||||    
T  8572732 gagaagatttcagtgactatttccgacggaagaacatcacccgccattggaaggaaggaagg 8572671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 9316740 - 9317004
Alignment:
Q  18 aaaggatggttgagtggaatcatggatttggttagattaggaagatc---gagttggtagagatcggtattgagctgaaggatgaggttgaaattgaggg 114  Q
    ||||||||||||||||||||||||||||| ||||| | ||| | |||   || ||||||||| ||||  |||   |||||||| | |     ||||||||    
T  9316740 aaaggatggttgagtggaatcatggatttcgttaggtcagggaaatcatcgatttggtagagttcggatttgtaatgaaggattaaggatcgattgaggg 9316839  T
Q  115 aattatttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaa 214  Q
    ||||||||||||||||||||||  |||||||||| ||||| ||||  ||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  9316840 aattatttttgaggtgaaggttgatgaagttgtgagaatctattaaagatttaagtgattttgaagttgatcggaatcggagaagtgattttactggtaa 9316939  T
Q  215 gcgggagaggatttccgtgaacaattccggcagaagaacatcacccgccattggaaggaaggaag 279  Q
    | |||||| |||||| | ||  | ||||||| ||||| | ||| |||||||||||||||| ||||    
T  9316940 gtgggagaagatttcggcgagtatttccggcggaagaccgtcagccgccattggaaggaaagaag 9317004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 12018342 - 12018134
Alignment:
Q  18 aaaggatggttgagtggaatcatggatttggttagattaggaagatcgagttggtagagatcggtattgagctgaaggatgaggttgaaattgagggaat 117  Q
    ||||||||||||||||| || | ||   |||||||  |||| | || |||||||||||||| ||| | | |  | |||||||||||||||||||||||      
T  12018342 aaaggatggttgagtgggatgacgg---tggttagggtagggaaatggagttggtagagatgggtgtcgtgacggaggatgaggttgaaattgagggatg 12018246  T
Q  118 tatttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcg 217  Q
      |||||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||    
T  12018245 agtttttgagttgaagattggtgaagttgtgagaatcgattatggatttaagtgattttgaagttgagcggaatcgaagaagtgattttactggtaagcg 12018146  T
Q  218 ggagaggatttc 229  Q
    ||||| ||||||    
T  12018145 ggagaagatttc 12018134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 21 - 229
Target Start/End: Original strand, 10348524 - 10348732
Alignment:
Q  21 ggatggttgagtggaatcatggatttggttagattaggaagatcgagttggtagagatcggtattgagctga---aggatgaggttgaaattgagggaat 117  Q
    |||| |||||||||||| || ||||||||||| ||||| | || ||||||||||| ||||||  ||   |||   ||||||||||||||||| || ||||    
T  10348524 ggatagttgagtggaatgatagatttggttaggttagggaaatggagttggtagaaatcggtggtgttgtgacggaggatgaggttgaaatttagagaat 10348623  T
Q  118 tatttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcg 217  Q
    | |||   |||||||||||  |||| ||| |||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  10348624 ttttt---aggtgaaggttgatgaatttgagggaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcg 10348720  T
Q  218 ggagaggatttc 229  Q
    ||||| ||||||    
T  10348721 ggagaagatttc 10348732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 9283602 - 9283394
Alignment:
Q  18 aaaggatggttgagtggaatcatggatttggttagattaggaagatcgagttggtagagatcggtattgagctgaaggatgaggttgaaattgagggaat 117  Q
    |||||||||||||| || || |||||||||||||| ||||| | ||||||||||||||||| ||| ||| |  | |||||||| ||||| |||||||||     
T  9283602 aaaggatggttgagcggtattatggatttggttaggttagggaaatcgagttggtagagattggtcttgtgacggaggatgagtttgaagttgagggaac 9283503  T
Q  118 tatttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcg 217  Q
    |   |||||||||||||||  |||| ||||| ||||| |||| ||||  ||||||||| |||||||| ||||||||||| |||||||| || |||||||     
T  9283502 t---tttgaggtgaaggttgatgaatttgtgagaatctattagggatcgaagtgatttagaagttgatcggaatcggagtagtgatttaactggtaagca 9283406  T
Q  218 ggagaggatttc 229  Q
    ||||| ||||||    
T  9283405 ggagaagatttc 9283394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 46 - 229
Target Start/End: Original strand, 10336560 - 10336740
Alignment:
Q  46 tggttagattaggaagatcgagttggtagagatcggtattgagctgaaggatgaggttgaaattgagggaattatttttgaggtgaaggttagtgaagtt 145  Q
    ||||||| ||||| | || ||| |||||||| ||||| ||| |  | ||||||||||| ||||||||||||||   ||  |||||||||||  |||| ||    
T  10336560 tggttaggttagggaaatggaggtggtagaggtcggttttgcgacggaggatgaggttaaaattgagggaatt---ttgaaggtgaaggttgatgaattt 10336656  T
Q  146 gtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgggagaggatttc 229  Q
    ||| |||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||| ||||||    
T  10336657 gtgagaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaaacgggagaagatttc 10336740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 119 - 229
Target Start/End: Original strand, 9292747 - 9292857
Alignment:
Q  119 atttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgg 218  Q
    ||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||| |||| ||||||| ||||||||||||||| |||| ||||    
T  9292747 atttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatcggaatctgagaagtgattttactggtacgcgg 9292846  T
Q  219 gagaggatttc 229  Q
    |||| ||||||    
T  9292847 gagaagatttc 9292857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 119 - 222
Target Start/End: Original strand, 10372701 - 10372804
Alignment:
Q  119 atttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgg 218  Q
    ||||| ||||||||||||  |||| ||||||||||||||||  ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10372701 attttggaggtgaaggttgatgaatttgtgggaatcgattaatgatttaaatgattttgaagttgatcggaatcggagaagtgattttaccggtaagcgg 10372800  T
Q  219 gaga 222  Q
    ||||    
T  10372801 gaga 10372804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 9275243 - 9275452
Alignment:
Q  18 aaaggatggttgagtggaatcatggatttggttagattaggaagatcgagttggtagagatcgg-tattgagctgaaggatgaggttgaaattgagggaa 116  Q
    ||||||||||||||| | || ||| |||||||||| ||||| | || ||||| |||||| | || | ||| | ||||| |||||||||||||||||||||    
T  9275243 aaaggatggttgagttgtattatgaatttggttaggttagggaaattgagttcgtagagtttgggtgttgtgttgaagaatgaggttgaaattgagggaa 9275342  T
Q  117 ttatttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagc 216  Q
    ||   |||||| ||||||||  |||||||||||||||| || |  |||||||||||||||||  |||| ||||||| ||||||||||| ||| ||||| |    
T  9275343 tt---tttgagatgaaggttgatgaagttgtgggaatcaatcaacgatttaagtgattttgagattgatcggaatcagagaagtgattgtactggtaacc 9275439  T
Q  217 gggagaggatttc 229  Q
    |||||| ||||||    
T  9275440 gggagaagatttc 9275452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 108 - 218
Target Start/End: Original strand, 9357924 - 9358034
Alignment:
Q  108 ttgagggaattatttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgatttta 207  Q
    |||| ||||||||||||||||||||||||  |||||||||| |||||||||| |||||||||||||||||||||||| |  || ||||||||||||||||    
T  9357924 ttgatggaattatttttgaggtgaaggtttatgaagttgtgagaatcgattaaggatttaagtgattttgaagttgatccaaaccggagaagtgatttta 9358023  T
Q  208 ccggtaagcgg 218  Q
    | |||||||||    
T  9358024 ctggtaagcgg 9358034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 120 - 234
Target Start/End: Complemental strand, 12011922 - 12011808
Alignment:
Q  120 tttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcggg 219  Q
    |||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |    |||||||||    
T  12011922 tttttgaggtgaagattggtgaagttgtgagaatcgattatggatttaagtgattttgaagttgagcggaatcggagaagtgattgtggatgtaagcggg 12011823  T
Q  220 agaggatttccgtga 234  Q
    ||| |||||| ||||    
T  12011822 agaagatttcggtga 12011808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 93 - 294
Target Start/End: Complemental strand, 7114998 - 7114803
Alignment:
Q  93 aggatgaggttgaaattgagggaattatttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatc 192  Q
    ||||||| ||||||||||| ||||||   ||| || ||||||||  |||| |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  7114998 aggatgaagttgaaattgaaggaatt---tttaagatgaaggttgatgaatttgtgggaatcgattaaggatttaagtgattttgaagttgatcggaatc 7114902  T
Q  193 ggagaagtgattttaccggtaagcgggagaggatttccgtgaacaattccggcagaagaacatcacccgccattggaaggaaggaaggttcgttctaggg 292  Q
    | |||||||||  ||| |||| ||| |||| |||||| |  |  | ||||||| ||||   |||| ||||||||||||||| | ||||||||||||||||    
T  7114901 gaagaagtgatcgtactggtaggcgagagaagatttcggatagtatttccggcggaag---atcagccgccattggaaggaggcaaggttcgttctaggg 7114805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 119 - 234
Target Start/End: Original strand, 10353964 - 10354079
Alignment:
Q  119 atttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgg 218  Q
    |||| |||||||||||||  |||| |||| ||||||||||| |||||||| ||||||||||||||| ||||||| |||||||||| ||||||||||||||    
T  10353964 atttctgaggtgaaggttgatgaatttgttggaatcgattagggatttaaatgattttgaagttgatcggaatctgagaagtgatattaccggtaagcgg 10354063  T
Q  219 gagaggatttccgtga 234  Q
    || |||||||| ||||    
T  10354064 gaaaggatttcggtga 10354079  T

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Target: chr2; HSP #17
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 119 - 267
Target Start/End: Complemental strand, 12005495 - 12005347
Alignment:
Q  119 atttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgg 218  Q
    |||||| || |||||||| ||||||||||| |||||||||||||||||||| |||| ||||||||| ||||||||||||||||||| |   |||||||||    
T  12005495 attttttagatgaaggttggtgaagttgtgagaatcgattatggatttaagcgattctgaagttgagcggaatcggagaagtgattgtggaggtaagcgg 12005396  T
Q  219 gagaggatttccgtgaacaattccggcagaagaacatcacccgccattg 267  Q
    |||| |||||| ||||  | ||| |   |||||||||||| ||||||||    
T  12005395 gagaagatttcggtgagtatttctgaaggaagaacatcactcgccattg 12005347  T

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Target: chr2; HSP #18
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 120 - 235
Target Start/End: Original strand, 7612716 - 7612831
Alignment:
Q  120 tttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcggg 219  Q
    ||||||||||||||||| ||||||||||||||||| |||| ||||||||| ||||| ||| |||| ||||||||||| || | || |||||||||||| |    
T  7612716 tttttgaggtgaaggtttgtgaagttgtgggaatcaattaaggatttaagcgatttagaaattgatcggaatcggaggagggtttgtaccggtaagcgag 7612815  T
Q  220 agaggatttccgtgaa 235  Q
    |||||||||| |||||    
T  7612816 agaggatttcagtgaa 7612831  T

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Target: chr2; HSP #19
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 124 - 229
Target Start/End: Complemental strand, 11986850 - 11986745
Alignment:
Q  124 tgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgggagag 223  Q
    |||||||||| || ||||||||||| ||||| |||||||||||||| |||| ||||||||| ||||||||||||||||||| |    ||||||||||||     
T  11986850 tgaggtgaagattggtgaagttgtgagaatcaattatggatttaagcgattctgaagttgagcggaatcggagaagtgattgtggatgtaagcgggagaa 11986751  T
Q  224 gatttc 229  Q
    ||||||    
T  11986750 gatttc 11986745  T

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Target: chr2; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 120 - 243
Target Start/End: Complemental strand, 8578854 - 8578731
Alignment:
Q  120 tttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcggg 219  Q
    |||||||||| | | || |||||| |||||||||| || | ||||  ||||||||| ||| |||| |||||||||||||| |||| ||||||||||||||    
T  8578854 tttttgaggtaatgtttggtgaaggtgtgggaatctatgaaggatcgaagtgatttagaaattgatcggaatcggagaagggattgtaccggtaagcggg 8578755  T
Q  220 agaggatttccgtgaacaattccg 243  Q
    ||||||| ||  ||||||||||||    
T  8578754 agaggatatcgatgaacaattccg 8578731  T

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Target: chr2; HSP #21
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 120 - 199
Target Start/End: Original strand, 9365415 - 9365494
Alignment:
Q  120 tttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaag 199  Q
    |||||||| || ||||| |||||| |||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  9365415 tttttgagatggaggttggtgaaggtgtgagaatcgattatggatttaagtgattttgaggttgatcggaatcggagaag 9365494  T

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Target: chr2; HSP #22
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 127 - 243
Target Start/End: Complemental strand, 17565436 - 17565320
Alignment:
Q  127 ggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgggagaggat 226  Q
    |||||||||| |||||||| |||||||| ||||   ||||||||||||| || ||||| |||| |||||| || |||| ||| |||||||| ||||||||    
T  17565436 ggtgaaggttggtgaagttatgggaatcaattaaaaatttaagtgatttcgacgttgatcggagtcggaggagggattgtactggtaagcgagagaggat 17565337  T
Q  227 ttccgtgaacaattccg 243  Q
    ||| ||||| |||||||    
T  17565336 ttcagtgaataattccg 17565320  T

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Target: chr2; HSP #23
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 14551140 - 14551215
Alignment:
Q  121 ttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggag 196  Q
    |||| |||||||| ||  ||||||||||||||||||||| ||||| |||||||||||||||||| |||||| ||||    
T  14551140 tttttaggtgaagtttgatgaagttgtgggaatcgattagggattgaagtgattttgaagttgatcggaattggag 14551215  T

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Target: scaffold0667 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 119 - 229
Target Start/End: Original strand, 5278 - 5388
Alignment:
Q  119 atttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgg 218  Q
    ||||||| ||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5278 atttttgcggtgaaggttgatgaagttgtgagaatcgattatggatttaagtgattttgaagttgatcggaatcggagaagtgattttaccggtaagcgg 5377  T
Q  219 gagaggatttc 229  Q
    |||| ||||||    
T  5378 gagaagatttc 5388  T

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Target: chr3 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 119 - 270
Target Start/End: Original strand, 37463341 - 37463492
Alignment:
Q  119 atttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgg 218  Q
    ||||||||| ||||||||  |||||||||| ||||||||||  ||||||||||||||||||||||| ||||||||||||||||||| ||| ||||| |||    
T  37463341 atttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaatcggagaagtgattctactggtaaacgg 37463440  T
Q  219 gagaggatttccgtgaacaattccggcagaagaacatcacccgccattggaa 270  Q
    ||||||||||| | ||  | ||||||| ||||| | ||| ||||||||||||    
T  37463441 gagaggatttcggcgagtatttccggcggaagaccgtcatccgccattggaa 37463492  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 46 - 238
Target Start/End: Original strand, 39428633 - 39428816
Alignment:
Q  46 tggttagattaggaagatcgagttggtagagatcggtattgagctgaaggatgaggttgaaattgagggaattatttttgaggtgaaggttagtgaagtt 145  Q
    ||||||| ||||| | ||||||||||||||||| |   ||| |  |||||||||||||||| |||||| | ||   ||||||||||||     |||||||    
T  39428633 tggttaggttagggaaatcgagttggtagagattgcagttgtggcgaaggatgaggttgaagttgaggtagtt---tttgaggtgaag-----tgaagtt 39428724  T
Q  146 gtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgggagaggatttccgtgaacaa 238  Q
    |||||||| ||||| |||||||| | ||||||||||||| |||||| |||| || ||||  ||||||||||||||||||||||| ||||||||    
T  39428725 gtgggaat-gattaaggatttaactcattttgaagttgatcggaattggaggagggattgcaccggtaagcgggagaggatttcggtgaacaa 39428816  T

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Target: chr5 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 46 - 236
Target Start/End: Original strand, 36225494 - 36225686
Alignment:
Q  46 tggttagattaggaagatcgagttggtagagatcggtattgagctgaaggatgaggttgaaattgagggaattat--ttttgaggtgaaggttagtgaag 143  Q
    ||||||| ||||| | ||| ||||||||||| | ||| ||  |  |||||||||||||||| |||| ||| || |  ||||||||||||| |||||||||    
T  36225494 tggttaggttagggaaatcaagttggtagagtttggttttctggcgaaggatgaggttgaagttgaaggagttttaattttgaggtgaagattagtgaag 36225593  T
Q  144 ttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgggagaggatttccgtgaac 236  Q
    ||||| ||||||||||  ||||||||||||||||||||||| ||||||||||| || ||||  ||  ||||||||||||||||||| ||||||    
T  36225594 ttgtgcgaatcgattaacgatttaagtgattttgaagttgatcggaatcggaggagggattgcactagtaagcgggagaggatttcggtgaac 36225686  T

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Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 119 - 234
Target Start/End: Original strand, 26575698 - 26575813
Alignment:
Q  119 atttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgg 218  Q
    |||| |||||||||||||  |||| |||| ||||||||||| | |||||||||||||||||||||| |||||||||||||||||| |||||||||| |||    
T  26575698 atttctgaggtgaaggttgatgaatttgtaggaatcgattaagaatttaagtgattttgaagttgatcggaatcggagaagtgatattaccggtaaacgg 26575797  T
Q  219 gagaggatttccgtga 234  Q
    |||| |||||| ||||    
T  26575798 gagaagatttcggtga 26575813  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 93 - 196
Target Start/End: Original strand, 561966 - 562066
Alignment:
Q  93 aggatgaggttgaaattgagggaattatttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatc 192  Q
    ||||||||||| ||||||||||| ||   ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| || | |||||||    
T  561966 aggatgaggttaaaattgagggagtt---tttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagccattttgaacttaatcggaatc 562062  T
Q  193 ggag 196  Q
    ||||    
T  562063 ggag 562066  T

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Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 124 - 229
Target Start/End: Complemental strand, 41966047 - 41965942
Alignment:
Q  124 tgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgggagag 223  Q
    |||||||||||||  ||||||||||||||||||||| ||||  ||||||||| || ||||| ||||||||||||| |||||||||||||||  ||||||     
T  41966047 tgaggtgaaggttgatgaagttgtgggaatcgattaaggatcgaagtgatttcgaggttgatcggaatcggagaactgattttaccggtaatagggagaa 41965948  T
Q  224 gatttc 229  Q
    ||||||    
T  41965947 gatttc 41965942  T

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Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 125 - 214
Target Start/End: Complemental strand, 29467149 - 29467060
Alignment:
Q  125 gaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaa 214  Q
    ||||||||| ||  ||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||| || |||| |||||||||    
T  29467149 gaggtgaagtttgatgaagttgtgggaatcgattagggattgaagtgattttgaggttgaacggaatcggaggagggattgtaccggtaa 29467060  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 119 - 214
Target Start/End: Complemental strand, 29452681 - 29452586
Alignment:
Q  119 atttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaa 214  Q
    ||||| ||||||||| ||  |||||||||| |||||||||| ||||| |||||||||||| ||||||||||||||||| || |||| |||||||||    
T  29452681 attttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaacggaatcggaggagggattgtaccggtaa 29452586  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 125 - 227
Target Start/End: Original strand, 29424039 - 29424141
Alignment:
Q  125 gaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgggagagg 224  Q
    ||||||||| ||  ||||| |||||||||||||||  |||| |||||||||||| ||||||||||||||||| || |||| |||||||||  | ||||||    
T  29424039 gaggtgaagcttgatgaagctgtgggaatcgattagagattgaagtgattttgaggttgaacggaatcggaggagggattgtaccggtaacagagagagg 29424138  T
Q  225 att 227  Q
    |||    
T  29424139 att 29424141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 119 - 227
Target Start/End: Complemental strand, 29442689 - 29442581
Alignment:
Q  119 atttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgg 218  Q
    ||||| ||||||||| ||  ||||||| ||||||||||||| ||||| ||||||||| || ||||||||||||||||| || |||| | |||||||  |     
T  29442689 attttggaggtgaagtttgatgaagttatgggaatcgattagggattgaagtgatttcgacgttgaacggaatcggaggagggattgtgccggtaacaga 29442590  T
Q  219 gagaggatt 227  Q
    |||||||||    
T  29442589 gagaggatt 29442581  T

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