View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15680_low_7 (Length: 405)
Name: NF15680_low_7
Description: NF15680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15680_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 4 - 388
Target Start/End: Complemental strand, 41075379 - 41074991
Alignment:
| Q |
4 |
aggctagcaccccatctaaacaaaatacacacataagtattcc----accacttagaccagacccttaagatagtccaaaaggaaccaggagaactctga |
99 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
41075379 |
aggctaacaccccatctaaacaaaatacacacataagtattcctttcaccacttagaccagacacttaagatagtccaaaaggaatcaggagaactctga |
41075280 |
T |
|
| Q |
100 |
tacactagcatcacctccatcgtgaattcaaaggaataggtacctcactcatgtatactccaaaaaacaaccactcaataaccggataccaatcaaattt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41075279 |
tacactagcatcacctccatcgtgaattcaaaggaataggtacctcactcatgtatactccaaaaaacaaccactcaataaccggataccaatcaaattt |
41075180 |
T |
|
| Q |
200 |
gccttcatggtaccaataacctttgttactccttgaaagtagtaacacagacatgcttaaaaaccaccaaataatccaagcatacaagctctcgttgaat |
299 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
41075179 |
gcctttatggtaccaataacctttgttactccttgaaagtagtaacacagacatacttaaaaatcaccaaataatccaagcatacaagctctcgttaaat |
41075080 |
T |
|
| Q |
300 |
ataattcatactacaatgagcactcttcaccagcacaccaatcactccaagtatttgcattcaaactactactaaactgtgtcaacact |
388 |
Q |
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| T |
41075079 |
ataattcatactacaatgagcactcttcaccagcacaccaatcactccaagtatttgcattcaaactactactaaactgtgtcaacact |
41074991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 4 - 386
Target Start/End: Complemental strand, 41086860 - 41086486
Alignment:
| Q |
4 |
aggctagcaccccatctaaacaaaatacacacataagtattccaccacttagaccagacccttaagatagtccaaaa-ggaaccaggagaactctgatac |
102 |
Q |
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|||||||||||||| |||||||||||||||||| |||||||||||| ||| |||||||||||| ||||||||||| ||||||||||||||||| |||| |
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| T |
41086860 |
aggctagcaccccaagtaaacaaaatacacacatcagtattccaccatttacaccagacccttacaatagtccaaaaaggaaccaggagaactctaatac |
41086761 |
T |
|
| Q |
103 |
actagcatcacctccatcgtgaattcaaaggaataggtacctcactcatgtatactccaaaaaacaaccactcaataaccggataccaatcaaatttgcc |
202 |
Q |
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||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41086760 |
actagcaacacctccattatgaattcagaggaataggtacctcactcatgtatactcaaaaaaacaaccaatcaataaccggataccaatcaaatttgcc |
41086661 |
T |
|
| Q |
203 |
ttcatggtaccaataacctttgttactccttgaaagtagtaacacagacatgcttaaaaaccaccaaataatccaagcatacaagctctcgttgaatata |
302 |
Q |
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||||||||||| | |||||| ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||| |||| ||| |||||| |
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| T |
41086660 |
ttcatggtacc---atcctttg-tactccttgaaagtagtaa-----acatacttaaaaactaccaaataatccaagcatacaaactctggttaaatata |
41086570 |
T |
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| Q |
303 |
attcatactacaatgagcactcttcaccagcacaccaatcactccaagtatttgcattcaaactactactaaactgtgtcaaca |
386 |
Q |
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|| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| |||| |
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| T |
41086569 |
atacataatacaatgagcactcttcaccagcacaccaatcacttcaagtatttgcattcaaactgctactgaactgtgttaaca |
41086486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 8e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 22 - 278
Target Start/End: Complemental strand, 48297424 - 48297170
Alignment:
| Q |
22 |
aacaaaatacacacataagtattccaccacttagaccagacccttaagatagtccaa-aaggaaccaggagaactctgatacactagcatcacctccatc |
120 |
Q |
| |
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|||||||||||||||||||||||||||| |||| || ||||||||| ||| ||||| ||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
48297424 |
aacaaaatacacacataagtattccaccgcttacactagacccttacgatggtccaggaaggaactaggagaactctaatacactagcatcacctccatc |
48297325 |
T |
|
| Q |
121 |
gtgaattcaaaggaataggtacctcactcatgtatactccaaaaaacaaccactcaataaccggataccaatcaaatttgccttcatggtaccaataacc |
220 |
Q |
| |
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|||||||| |||||||||||||||| ||||||||||||||||||||| ||| ||||||| ||||||||||||||||| |||| | |||| |||| |
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| T |
48297324 |
atgaattcataggaataggtacctcaatcatgtatactccaaaaaacagccaatcaataataggataccaatcaaattttcctttcggatacc---aacc |
48297228 |
T |
|
| Q |
221 |
tttgttactccttgaaagtagtaacacagacatgcttaaaaaccaccaaataatccaa |
278 |
Q |
| |
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|||||| |||||||||||||| |||| | |||| |||||||||||||||||||||||| |
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| T |
48297227 |
tttgttgctccttgaaagtagaaacataaacatacttaaaaaccaccaaataatccaa |
48297170 |
T |
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