View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15680_low_8 (Length: 396)
Name: NF15680_low_8
Description: NF15680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15680_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 19 - 386
Target Start/End: Complemental strand, 9258067 - 9257700
Alignment:
| Q |
19 |
agggttgcatcaccaccagtgtcatgtccaccttcacagcttcattcaccatctctcacaagatcaccactacttcaatcagagaatggagatgcaccac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9258067 |
agggttgcatcaccaccagtgtcatgtccaccttcacagcttcattcaccatctctcacaagatcaccactacttcaatcagagaatggagatgcaccac |
9257968 |
T |
|
| Q |
119 |
atcctaagagtaagactccaaagactcctagaacaccaagaatgtctttgacaccaaggtttattacccctttgggaagtcctatgaggaaagctttgag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9257967 |
atcctaagagtaagactccaaagactcctagaacaccaagaatgtctttgacaccaaggtttattacccctttgggaagtcctatgaggaaagctttgag |
9257868 |
T |
|
| Q |
219 |
attaactaagcttgatcctcaagatgcttggcttccaattactgagtcaagaaatggtaacaaatattatgctgcttttcatactctttgttctgggatt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9257867 |
attaactaagcttgatcctcaagatgcttggcttccaataactgagtcaagaaatggtaacaaatattatgctgcttttcatactctttgttctgggatt |
9257768 |
T |
|
| Q |
319 |
ggtattcaggctcttgttcttcctgttgccttcactattcttggttggtaagtttcatatagtttcat |
386 |
Q |
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| T |
9257767 |
ggtattcaggctcttgttcttcctgttgccttcactattcttggttggtaagtttcatatagtttcat |
9257700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 32 - 372
Target Start/End: Complemental strand, 9244384 - 9244047
Alignment:
| Q |
32 |
caccagtgtcatgtccaccttcacagcttcatt---caccatctctcacaagatcaccactacttcaatcagagaatggagatgcaccacatcctaagag |
128 |
Q |
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| T |
9244384 |
caccagtatcatgtcccccctctcagcttcaatactcaccatctctcacaagatcaccccttcttcattcagagaatgaggatacaccaaatccaaaga- |
9244286 |
T |
|
| Q |
129 |
taagactccaaagactcctagaacaccaagaatgtctttgac---accaaggtttattacccctttgggaagtcctatgaggaaagctttgagattaact |
225 |
Q |
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|| ||||| ||||||||||||||||||||||| || ||||||||||||||||||||| |||| ||| | ||||| ||||||||| ||| |
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| T |
9244285 |
----ac----aagacccctagaacaccaagaatgtcttttaccccaccaaggtttattacccctttaggaacacctgttaggaatgctttgagactaatc |
9244194 |
T |
|
| Q |
226 |
aagcttgatcctcaagatgcttggcttccaattactgagtcaagaaatggtaacaaatattatgctgcttttcatactctttgttctgggattggtattc |
325 |
Q |
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|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9244193 |
aaacttgatcctcaagatgcttggcttccaataactgagtcaagaaatggtaacaaatattatgctgcttttcatactctttgttctgggattggtattc |
9244094 |
T |
|
| Q |
326 |
aggctcttgttcttcctgttgccttcactattcttggttggtaagtt |
372 |
Q |
| |
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| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9244093 |
aagctcttgttcttcctgttgctttcactattcttggttggtaagtt |
9244047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 223 - 266
Target Start/End: Original strand, 3099782 - 3099825
Alignment:
| Q |
223 |
actaagcttgatcctcaagatgcttggcttccaattactgagtc |
266 |
Q |
| |
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||||||||| ||||||||||||| |||||||||||||| ||||| |
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| T |
3099782 |
actaagcttaatcctcaagatgcatggcttccaattaccgagtc |
3099825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 367
Target Start/End: Complemental strand, 53781796 - 53781715
Alignment:
| Q |
286 |
tatgctgcttttcatactctttgttctgggattggtattcaggctcttgttcttcctgttgccttcactattcttggttggt |
367 |
Q |
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||||||||||||||| ||||||||||| ||||| |||| || |||||||||||| | |||||||| | |||||| |||| |
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| T |
53781796 |
tatgctgcttttcatttgctttgttctggaattggatttcaagcacttgttcttcctttggccttcaccactcttggctggt |
53781715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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