View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15680_low_9 (Length: 394)
Name: NF15680_low_9
Description: NF15680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15680_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 12 - 379
Target Start/End: Complemental strand, 37539651 - 37539284
Alignment:
| Q |
12 |
agaaaaataagctgaagctagacaaagaaaagttggaacagcaagtcaaattagcaagtgtacagtccaacttcctctctaatgcaatggctggtaaagg |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37539651 |
agaaaaataagctgaagctagacaaagaaaagttggaacagcaagtcaaattagcaagtgtacagtccaacttcctctctaatgcaatggctgctaaagg |
37539552 |
T |
|
| Q |
112 |
acaaactgcaaaccacaagctgatgcctttcattggttatcctggaatttcaatgtggcagtttatgtcacctgctacagttgatacatcacaggatcat |
211 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37539551 |
acaaactgctaaccacaagctgatgcctttcattggttatcctggaatttcaatgtggcagtttatgtcacctgctacagttgatacatcacaggatcat |
37539452 |
T |
|
| Q |
212 |
ctgcttcgacctccagttgcttaaagtggttagcaacagcatccacttccttattgtacaaagttgttagttgaacatcgatttgagacataaaaattcg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37539451 |
ctgcttcgacctccagttgcttaaagtggttagcaacagcatccacttccttattgtacaaagttgttagttgaacatcgatttgagacataaaaattcg |
37539352 |
T |
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| Q |
312 |
acaattttttacatggttaacgcagttcgcacacgtggttcatgaagtgttagatttggttaatagat |
379 |
Q |
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| T |
37539351 |
acaattttttacatggttaacgcagttcgcacatgtggttcatgaagtgttagatttggttaatagat |
37539284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 147 - 231
Target Start/End: Complemental strand, 31538221 - 31538137
Alignment:
| Q |
147 |
gttatcctggaatttcaatgtggcagtttatgtcacctgctacagttgatacatcacaggatcatctgcttcgacctccagttgc |
231 |
Q |
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| T |
31538221 |
gttatcctggagttgcaatgtggcaatttatgccacctgctgcagtggatacctcacaggatcatgtacttcgtcctccagttgc |
31538137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 379
Target Start/End: Complemental strand, 54458106 - 54458031
Alignment:
| Q |
304 |
aaaattcgacaattttttacatggttaacgcagttcgcacacgtggttcatgaagtgttagatttggttaatagat |
379 |
Q |
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||||||| |||| |||||| |||||||| || ||| || || ||||| |||||||||||||||| |||||||||| |
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| T |
54458106 |
aaaattcaacaactttttaaatggttaaaacaattcacaaacatggttaatgaagtgttagatttagttaatagat |
54458031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 276 - 379
Target Start/End: Original strand, 1428457 - 1428560
Alignment:
| Q |
276 |
tgttagttgaacatcgatttgagacataaaaattcgacaattttttacatggttaacgcagttcgcacacgtggttcatgaagtgttagatttggttaat |
375 |
Q |
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||||| ||||| ||| ||||||| || ||||||| |||| |||||| |||| | ||| ||||||||||||||||| || ||| | |||||| ||||||| |
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| T |
1428457 |
tgttatttgaatatcattttgagaaatcaaaattcaacaactttttaaatggatcacgtagttcgcacacgtggttaattaagcgctagattcggttaat |
1428556 |
T |
|
| Q |
376 |
agat |
379 |
Q |
| |
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|||| |
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| T |
1428557 |
agat |
1428560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 379
Target Start/End: Complemental strand, 14277901 - 14277839
Alignment:
| Q |
317 |
tttttacatggttaacgcagttcgcacacgtggttcatgaagtgttagatttggttaatagat |
379 |
Q |
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|||||| |||||||||| ||||| | | |||||| |||| |||||||||||||||||||||| |
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| T |
14277901 |
tttttaaatggttaacgaagttcatatatgtggttaatgatgtgttagatttggttaatagat |
14277839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 40181233 - 40181297
Alignment:
| Q |
305 |
aaattcgacaattttttacatggttaacgcagttcgcacacgtggttcatgaagtgttagatttg |
369 |
Q |
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||||| |||||||||||| ||| ||||| | |||| || |||||||| ||||||||| ||||||| |
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| T |
40181233 |
aaatttgacaattttttaaatgattaacactgttcacatacgtggttaatgaagtgtaagatttg |
40181297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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