View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15681_high_2 (Length: 686)

Name: NF15681_high_2
Description: NF15681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15681_high_2
NF15681_high_2
[»] chr8 (32 HSPs)
chr8 (486-668)||(4639182-4639364)
chr8 (132-250)||(4638829-4638947)
chr8 (312-402)||(4639009-4639099)
chr8 (50-132)||(4631559-4631641)
chr8 (12-83)||(2944237-2944309)
chr8 (15-86)||(13153925-13153997)
chr8 (50-83)||(16998996-16999029)
chr8 (12-83)||(39029178-39029250)
chr8 (50-86)||(28572043-28572079)
chr8 (50-86)||(28579636-28579672)
chr8 (50-86)||(34568487-34568523)
chr8 (15-84)||(32675725-32675795)
chr8 (50-85)||(44250857-44250892)
chr8 (15-83)||(51063-51132)
chr8 (50-84)||(8251937-8251971)
chr8 (50-84)||(17856780-17856814)
chr8 (50-84)||(18754143-18754177)
chr8 (50-84)||(26016568-26016602)
chr8 (15-83)||(28192143-28192212)
chr8 (50-84)||(29279460-29279494)
chr8 (50-84)||(38781145-38781179)
chr8 (50-84)||(40530410-40530444)
chr8 (50-83)||(1774342-1774375)
chr8 (50-83)||(8951432-8951465)
chr8 (50-83)||(11798869-11798902)
chr8 (50-83)||(13154192-13154225)
chr8 (50-83)||(17856517-17856550)
chr8 (50-87)||(26016832-26016869)
chr8 (50-83)||(42885054-42885087)
chr8 (50-83)||(43653943-43653976)
chr8 (51-83)||(18455720-18455752)
chr8 (50-86)||(23688169-23688205)
[»] chr1 (39 HSPs)
chr1 (490-583)||(48512178-48512273)
chr1 (582-668)||(48511889-48511978)
chr1 (141-250)||(48512479-48512601)
chr1 (317-394)||(48512355-48512433)
chr1 (86-142)||(48512636-48512692)
chr1 (12-84)||(4102679-4102752)
chr1 (15-86)||(11741394-11741466)
chr1 (15-86)||(37951917-37951989)
chr1 (15-86)||(39497430-39497502)
chr1 (50-86)||(9202242-9202278)
chr1 (12-86)||(41855438-41855513)
chr1 (15-88)||(1039349-1039423)
chr1 (15-88)||(1046255-1046329)
chr1 (15-84)||(45039411-45039481)
chr1 (15-84)||(52431142-52431212)
chr1 (50-88)||(943641-943679)
chr1 (50-84)||(1047991-1048025)
chr1 (15-83)||(15811200-15811269)
chr1 (15-83)||(23541979-23542048)
chr1 (15-83)||(36694854-36694923)
chr1 (15-83)||(36710955-36711024)
chr1 (50-84)||(38920238-38920272)
chr1 (50-84)||(39362933-39362967)
chr1 (50-84)||(39750120-39750154)
chr1 (15-83)||(49907021-49907090)
chr1 (12-84)||(52601990-52602063)
chr1 (15-86)||(16576060-16576132)
chr1 (50-83)||(23542243-23542276)
chr1 (50-83)||(30290265-30290298)
chr1 (50-83)||(39363198-39363231)
chr1 (50-83)||(39497697-39497730)
chr1 (50-83)||(44646535-44646568)
chr1 (50-83)||(44649629-44649662)
chr1 (50-83)||(44649893-44649926)
chr1 (50-83)||(46075871-46075904)
chr1 (50-86)||(7763753-7763789)
chr1 (50-86)||(30289599-30289635)
chr1 (50-82)||(30289866-30289898)
chr1 (50-86)||(47069052-47069088)
[»] chr3 (40 HSPs)
chr3 (12-86)||(7181347-7181422)
chr3 (50-88)||(37728708-37728746)
chr3 (15-86)||(22103897-22103969)
chr3 (50-86)||(20862461-20862497)
chr3 (15-85)||(25149090-25149161)
chr3 (50-86)||(26806112-26806148)
chr3 (15-85)||(44543780-44543851)
chr3 (50-86)||(50647681-50647717)
chr3 (50-86)||(51284066-51284102)
chr3 (50-85)||(12050396-12050431)
chr3 (50-85)||(14428873-14428908)
chr3 (15-84)||(35868051-35868121)
chr3 (15-83)||(4024052-4024121)
chr3 (50-88)||(4759355-4759393)
chr3 (15-83)||(9499465-9499534)
chr3 (50-84)||(33868712-33868746)
chr3 (50-84)||(43868102-43868136)
chr3 (50-83)||(4024315-4024348)
chr3 (15-86)||(7051688-7051760)
chr3 (50-83)||(9779979-9780012)
chr3 (50-83)||(10220933-10220966)
chr3 (50-83)||(14428610-14428643)
chr3 (50-83)||(16434977-16435010)
chr3 (50-83)||(21756486-21756519)
chr3 (50-83)||(26593769-26593802)
chr3 (50-83)||(29719714-29719747)
chr3 (50-83)||(31531415-31531448)
chr3 (50-83)||(36005768-36005801)
chr3 (50-83)||(45252773-45252806)
chr3 (50-83)||(46049990-46050023)
chr3 (50-83)||(46878443-46878476)
chr3 (50-83)||(52058985-52059018)
chr3 (50-83)||(54604592-54604625)
chr3 (50-86)||(10015793-10015829)
chr3 (50-86)||(19897840-19897876)
chr3 (50-86)||(26306611-26306647)
chr3 (50-86)||(27687983-27688019)
chr3 (50-86)||(41392884-41392920)
chr3 (51-87)||(48904268-48904304)
chr3 (50-86)||(53361859-53361895)
[»] chr4 (25 HSPs)
chr4 (12-85)||(36391852-36391926)
chr4 (12-83)||(26625967-26626039)
chr4 (15-84)||(4035824-4035894)
chr4 (50-85)||(20747434-20747469)
chr4 (50-85)||(45742810-45742845)
chr4 (15-83)||(5375525-5375594)
chr4 (15-83)||(5743627-5743696)
chr4 (15-83)||(34273187-34273256)
chr4 (15-83)||(44294789-44294858)
chr4 (15-83)||(47806860-47806929)
chr4 (50-83)||(4036089-4036122)
chr4 (50-83)||(4549629-4549662)
chr4 (50-83)||(9328244-9328277)
chr4 (50-83)||(20391441-20391474)
chr4 (50-83)||(29014064-29014097)
chr4 (50-83)||(30771528-30771561)
chr4 (50-83)||(32032997-32033030)
chr4 (50-83)||(33413518-33413551)
chr4 (50-83)||(35675924-35675957)
chr4 (50-83)||(52977982-52978015)
chr4 (50-83)||(55631999-55632032)
chr4 (50-86)||(17610024-17610060)
chr4 (50-86)||(52181190-52181226)
chr4 (50-86)||(52870641-52870677)
chr4 (51-83)||(53277190-53277222)
[»] chr7 (20 HSPs)
chr7 (12-83)||(19920563-19920635)
chr7 (15-86)||(39871581-39871653)
chr7 (50-86)||(32814430-32814466)
chr7 (50-86)||(33858870-33858906)
chr7 (15-84)||(38858297-38858367)
chr7 (50-84)||(20075111-20075145)
chr7 (15-83)||(21295151-21295220)
chr7 (50-84)||(28060981-28061015)
chr7 (50-84)||(29286041-29286075)
chr7 (50-84)||(36698135-36698169)
chr7 (15-83)||(40300230-40300299)
chr7 (15-83)||(41252329-41252398)
chr7 (50-83)||(26255096-26255129)
chr7 (50-83)||(32872379-32872412)
chr7 (50-83)||(38428411-38428444)
chr7 (50-83)||(39197718-39197751)
chr7 (50-83)||(41003158-41003191)
chr7 (50-83)||(41026100-41026133)
chr7 (50-83)||(48521029-48521062)
chr7 (50-86)||(34012521-34012557)
[»] chr6 (15 HSPs)
chr6 (12-87)||(19097766-19097842)
chr6 (51-86)||(12144043-12144078)
chr6 (50-84)||(4844399-4844433)
chr6 (15-83)||(9038642-9038711)
chr6 (50-84)||(30248646-30248680)
chr6 (15-83)||(34301800-34301869)
chr6 (50-84)||(34741730-34741764)
chr6 (50-83)||(231109-231142)
chr6 (50-83)||(8743188-8743221)
chr6 (50-83)||(9388529-9388562)
chr6 (50-83)||(11847836-11847869)
chr6 (50-83)||(13648133-13648166)
chr6 (50-83)||(23398143-23398176)
chr6 (50-86)||(13321330-13321366)
chr6 (50-86)||(25045647-25045683)
[»] chr2 (25 HSPs)
chr2 (12-86)||(15228114-15228189)
chr2 (15-85)||(34883816-34883887)
chr2 (15-84)||(8841625-8841695)
chr2 (50-85)||(11201681-11201716)
chr2 (15-84)||(20252209-20252279)
chr2 (15-84)||(40607701-40607771)
chr2 (15-83)||(2438225-2438294)
chr2 (50-84)||(16108214-16108248)
chr2 (51-85)||(22182929-22182963)
chr2 (15-83)||(23788969-23789038)
chr2 (15-83)||(27560206-27560275)
chr2 (50-84)||(34062669-34062703)
chr2 (50-84)||(39833738-39833772)
chr2 (50-84)||(41450515-41450549)
chr2 (50-83)||(2438489-2438522)
chr2 (15-86)||(5664635-5664707)
chr2 (50-83)||(7491844-7491877)
chr2 (50-83)||(7492108-7492141)
chr2 (50-83)||(8716896-8716929)
chr2 (50-83)||(17408298-17408331)
chr2 (50-83)||(22897655-22897688)
chr2 (50-83)||(34113790-34113823)
chr2 (50-83)||(36131032-36131065)
chr2 (50-83)||(45474351-45474384)
chr2 (51-87)||(8841393-8841429)
[»] scaffold0008 (1 HSPs)
scaffold0008 (50-85)||(259126-259161)
[»] chr5 (19 HSPs)
chr5 (50-85)||(9020692-9020727)
chr5 (15-88)||(9828388-9828462)
chr5 (50-85)||(16127257-16127292)
chr5 (15-84)||(22527691-22527761)
chr5 (15-84)||(34662203-34662273)
chr5 (15-84)||(40004377-40004447)
chr5 (50-84)||(186362-186396)
chr5 (15-83)||(1265949-1266018)
chr5 (50-84)||(6673232-6673266)
chr5 (50-84)||(14913647-14913681)
chr5 (50-84)||(26894877-26894911)
chr5 (50-83)||(7951562-7951595)
chr5 (50-83)||(9828657-9828690)
chr5 (50-83)||(10734527-10734560)
chr5 (51-84)||(16440930-16440963)
chr5 (50-83)||(41687116-41687149)
chr5 (50-86)||(3497537-3497573)
chr5 (50-86)||(16153259-16153295)
chr5 (50-86)||(41383909-41383945)
[»] scaffold0122 (1 HSPs)
scaffold0122 (50-84)||(12064-12098)
[»] scaffold0029 (1 HSPs)
scaffold0029 (50-84)||(51686-51720)
[»] scaffold0012 (1 HSPs)
scaffold0012 (50-84)||(47639-47673)
[»] scaffold0002 (1 HSPs)
scaffold0002 (50-84)||(355335-355369)
[»] scaffold0604 (1 HSPs)
scaffold0604 (50-83)||(3786-3819)
[»] scaffold0308 (1 HSPs)
scaffold0308 (50-83)||(14352-14385)
[»] scaffold0025 (1 HSPs)
scaffold0025 (50-83)||(65378-65411)
[»] scaffold0237 (1 HSPs)
scaffold0237 (50-86)||(6613-6649)


Alignment Details
Target: chr8 (Bit Score: 183; Significance: 1e-98; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 486 - 668
Target Start/End: Original strand, 4639182 - 4639364
Alignment:
Q  486 gatcaaatatgttacattttttaatatagaaaaagacttgtcatctttgtttaagaatattgttgtgttgatgagagagacatgcaaatacatattcaat 585  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4639182 gatcaaatatgttacattttttaatatagaaaaagacttgtcatctttgtttaagaatattgttgtgttgatgagagagacatgcaaatacatattcaat 4639281  T
Q  586 caacaccaacatcattcttaaataaataaaatacagacattggatttagctgttgtcaaagaattgaaaccagtgttggtttg 668  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4639282 caacaccaacatcattcttaaataaataaaatacagacattggatttagctgttgtcaaagaattgaaaccagtgttggtttg 4639364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 132 - 250
Target Start/End: Original strand, 4638829 - 4638947
Alignment:
Q  132 atgaagaatattttgaaattgaacttgtcaaggttgcaggcatggagagcacagaacctgaacttgatcatgtaaccagtagcctcgtgaagcaccgaag 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4638829 atgaagaatattttgaaattgaacttgtcaaggttgcaggcatggagagcacagaacctgaacttgatcatgtaaccagtagcctcgtgaagcaccgaag 4638928  T
Q  232 ctgtatcagtctgcacatg 250  Q
    |||||||||||||||||||    
T  4638929 ctgtatcagtctgcacatg 4638947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 312 - 402
Target Start/End: Original strand, 4639009 - 4639099
Alignment:
Q  312 ataattttaataacactggaaaatatactactaatttaccttgccaaagggtgaaacatgttgtaacgctgcaattcgttcacaaagcttc 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4639009 ataattttaataacactggaaaatatactactaatttaccttgccaaagggtgaaacatgttgtaacgctgcaattcgttcaccaagcttc 4639099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 4631559 - 4631641
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtattactgatttgaccatcctttgaccataaataacattatcatagaataa 132  Q
    ||||| ||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4631559 caaaatggtcttataattagggacggatggagtattactgatttgatcatcctttgaccataaataacattatcatagaataa 4631641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 2944237 - 2944309
Alignment:
Q  12 tagcaaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagta 83  Q
    |||||||||||||||||||||||| |||||         ||||||||||||||||||| ||||||||||||||    
T  2944237 tagcaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 2944309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 13153997 - 13153925
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagtatta 86  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| |||||||||||||||||    
T  13153997 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtatta 13153925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 16999029 - 16998996
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||||||||||||||||||    
T  16999029 caaaagggtcttataattatggacggagggagta 16998996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 39029250 - 39029178
Alignment:
Q  12 tagcaaaggggtcttataaaaa-ggacaaannnnnnnnncaaaagggtcttataattatggacggagggagta 83  Q
    |||||||||||||||||||||| |||||||         ||||||||||||||||||| ||||||||||||||    
T  39029250 tagcaaaggggtcttataaaaaaggacaaaaaattttctcaaaagggtcttataattagggacggagggagta 39029178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 28572079 - 28572043
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtatta 86  Q
    ||||||||||||||||||| |||||||||||||||||    
T  28572079 caaaagggtcttataattagggacggagggagtatta 28572043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 28579672 - 28579636
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtatta 86  Q
    ||||||||||||||||||| |||||||||||||||||    
T  28579672 caaaagggtcttataattagggacggagggagtatta 28579636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 34568523 - 34568487
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtatta 86  Q
    ||||||||||||||||||| |||||||||||||||||    
T  34568523 caaaagggtcttataattagggacggagggagtatta 34568487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 32675725 - 32675795
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| |||||||||||||||    
T  32675725 caaaggggtcttataaaaagggacaaatttttttctcaaaagggtcttataattagggacggagggagtat 32675795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 44250892 - 44250857
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtatt 85  Q
    ||||||||||||||||||| ||||||||||||||||    
T  44250892 caaaagggtcttataattagggacggagggagtatt 44250857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 51063 - 51132
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| ||||||||||||||    
T  51063 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 51132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 8251937 - 8251971
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||| |||||||||||||||    
T  8251937 caaaagggtcttataattagggacggagggagtat 8251971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 17856780 - 17856814
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||| |||||||||||||||    
T  17856780 caaaagggtcttataattagggacggagggagtat 17856814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 84
Target Start/End: Complemental strand, 18754177 - 18754143
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||| |||||||||||||||    
T  18754177 caaaagggtcttataattagggacggagggagtat 18754143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 84
Target Start/End: Complemental strand, 26016602 - 26016568
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||| |||||||||||||||    
T  26016602 caaaagggtcttataattagggacggagggagtat 26016568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 28192143 - 28192212
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| ||||||||||||||    
T  28192143 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 28192212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 29279460 - 29279494
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||| |||||||||||||||    
T  29279460 caaaagggtcttataattagggacggagggagtat 29279494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 38781145 - 38781179
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||||||||||||| |||||    
T  38781145 caaaagggtcttataattatggacggaggtagtat 38781179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 40530410 - 40530444
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||| |||||||||||||||    
T  40530410 caaaagggtcttataattagggacggagggagtat 40530444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 1774375 - 1774342
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  1774375 caaaagggtcttataattagggacggagggagta 1774342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 8951432 - 8951465
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  8951432 caaaagggtcttataattagggacggagggagta 8951465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 11798869 - 11798902
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  11798869 caaaagggtcttataattagggacggagggagta 11798902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 13154192 - 13154225
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  13154192 caaaagggtcttataattagggacggagggagta 13154225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 17856550 - 17856517
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  17856550 caaaagggtcttataattaaggacggagggagta 17856517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 26016832 - 26016869
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtattac 87  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  26016832 caaaagggtcctataattagggacggagggagtattac 26016869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 42885087 - 42885054
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  42885087 caaaagggtcttataattagggacggagggagta 42885054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 43653976 - 43653943
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  43653976 caaaagggtcttataattagggacggagggagta 43653943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 18455752 - 18455720
Alignment:
Q  51 aaaagggtcttataattatggacggagggagta 83  Q
    |||||||||||||||||| ||||||||||||||    
T  18455752 aaaagggtcttataattagggacggagggagta 18455720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 23688169 - 23688205
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtatta 86  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  23688169 caaaagggtcttataattagggacggaggtagtatta 23688205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 490 - 583
Target Start/End: Complemental strand, 48512273 - 48512178
Alignment:
Q  490 aaatatgttacatttttt--aatatagaaaaagacttgtcatctttgtttaagaatattgttgtgttgatgagagagacatgcaaatacatattca 583  Q
    ||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  48512273 aaatatgttacattttttttaatatagaaaaggacttgtcatctttgtttaagaatattgttgtgttgatgagagagacatgcaaacacatattca 48512178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 582 - 668
Target Start/End: Complemental strand, 48511978 - 48511889
Alignment:
Q  582 caatcaacaccaacatcattcttaaataaataaa---atacagacattggatttagctgttgtcaaagaattgaaaccagtgttggtttg 668  Q
    ||||||||||||||||||||||||||||||||||   | ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  48511978 caatcaacaccaacatcattcttaaataaataaataaacacagacattggatttagttgttgtcaaagaattgaaaccagtgttggtttg 48511889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 141 - 250
Target Start/End: Complemental strand, 48512601 - 48512479
Alignment:
Q  141 attttgaaattgaacttgtcaaggttgcaggcatggagagcacagaacctgaacttgatcat-------------gtaaccagtagcctcgtgaagcacc 227  Q
    ||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||             |||||||||||||||||||||||||    
T  48512601 attttgaaattgaacttgtgaaggttgcaagtatggagagcacagaacctgaacttgatcatgtaagaatcttatgtaaccagtagcctcgtgaagcacc 48512502  T
Q  228 gaagctgtatcagtctgcacatg 250  Q
    |||||||||||||||||||||||    
T  48512501 gaagctgtatcagtctgcacatg 48512479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 317 - 394
Target Start/End: Complemental strand, 48512433 - 48512355
Alignment:
Q  317 tttaataacactggaaaatatactactaatttaccttgccaaagggtgaaaca---tgttgtaacgctgcaattcgttcac 394  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  48512433 tttaataacactggaaaatatat--ctaatttaccttgccaaagggtgaaacaagttgttgtaacgctgcaattcgttcac 48512355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 48512692 - 48512636
Alignment:
Q  86 actgatttgaccatcctttgaccataaataacattatcatagaataatgaagaatat 142  Q
    |||||||||||||||| ||||||||||||||||||| |||||||| | |||||||||    
T  48512692 actgatttgaccatccattgaccataaataacattaacatagaattacgaagaatat 48512636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 4102679 - 4102752
Alignment:
Q  12 tagcaaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagtat 84  Q
    |||||||||||||||||||||||| |||||         ||||||||||||||||||| |||||||||||||||    
T  4102679 tagcaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtat 4102752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 11741466 - 11741394
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagtatta 86  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| |||||||||||||||||    
T  11741466 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtatta 11741394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 37951917 - 37951989
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagtatta 86  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| |||||||||||||||||    
T  37951917 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtatta 37951989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 39497502 - 39497430
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagtatta 86  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| |||||||||||||||||    
T  39497502 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtatta 39497430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 9202278 - 9202242
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtatta 86  Q
    ||||||||||||||||||| |||||||||||||||||    
T  9202278 caaaagggtcttataattagggacggagggagtatta 9202242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 41855438 - 41855513
Alignment:
Q  12 tagcaaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagtatta 86  Q
    |||||||||||||||||||||||| |||||         ||||||||||||||||||| ||||||| |||||||||    
T  41855438 tagcaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggatggagtatta 41855513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 1039349 - 1039423
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagtattact 88  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| |||||||||||||| ||||    
T  1039349 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtactact 1039423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 1046255 - 1046329
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagtattact 88  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| |||||||||||||| ||||    
T  1046255 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtactact 1046329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 45039481 - 45039411
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| |||||||||||||||    
T  45039481 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtat 45039411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 52431142 - 52431212
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| |||||||||||||||    
T  52431142 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtat 52431212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 88
Target Start/End: Original strand, 943641 - 943679
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtattact 88  Q
    ||||||||||||||||||| |||||||||||||| ||||    
T  943641 caaaagggtcttataattagggacggagggagtaatact 943679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 84
Target Start/End: Complemental strand, 1048025 - 1047991
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||| |||||||||||||||    
T  1048025 caaaagggtcttataattagggacggagggagtat 1047991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 15811200 - 15811269
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| ||||||||||||||    
T  15811200 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 15811269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 23542048 - 23541979
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| ||||||||||||||    
T  23542048 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 23541979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 36694923 - 36694854
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| ||||||||||||||    
T  36694923 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 36694854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 36711024 - 36710955
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| ||||||||||||||    
T  36711024 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 36710955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 84
Target Start/End: Complemental strand, 38920272 - 38920238
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||| |||||||||||||||    
T  38920272 caaaagggtcttataattagggacggagggagtat 38920238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 84
Target Start/End: Complemental strand, 39362967 - 39362933
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||| |||||||||||||||    
T  39362967 caaaagggtcttataattagggacggagggagtat 39362933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 84
Target Start/End: Complemental strand, 39750154 - 39750120
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||| |||||||||||||||    
T  39750154 caaaagggtcttataattagggacggagggagtat 39750120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 49907090 - 49907021
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| ||||||||||||||    
T  49907090 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 49907021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 52602063 - 52601990
Alignment:
Q  12 tagcaaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagtat 84  Q
    |||||||||||||||||||||||| |||||          |||||||||||||||||| |||||||||||||||    
T  52602063 tagcaaaggggtcttataaaaagggacaaaaaaaattcttaaaagggtcttataattagggacggagggagtat 52601990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 16576060 - 16576132
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagtatta 86  Q
    ||||||||||||||||||||| |||||         |||||| |||||||||||| |||||||||||||||||    
T  16576060 caaaggggtcttataaaaagggacaaaaaaaattatcaaaagagtcttataattagggacggagggagtatta 16576132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 23542243 - 23542276
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  23542243 caaaagggtcttataattagggacggagggagta 23542276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 30290298 - 30290265
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  30290298 caaaagggtcttataattagggacggagggagta 30290265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 39363198 - 39363231
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  39363198 caaaagggtcttataattagggacggagggagta 39363231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 39497697 - 39497730
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  39497697 caaaagggtcttataattagggacggagggagta 39497730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 44646535 - 44646568
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  44646535 caaaagggtcttataattagggacggagggagta 44646568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 44649662 - 44649629
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  44649662 caaaagggtcttataattagggacggagggagta 44649629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 44649893 - 44649926
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  44649893 caaaagggtcttataattagggacggagggagta 44649926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 46075871 - 46075904
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  46075871 caaaagggtcttataattagggacggagggagta 46075904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 7763753 - 7763789
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtatta 86  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  7763753 caaaagggtcttataattagggacggaggtagtatta 7763789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 30289635 - 30289599
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtatta 86  Q
    |||||| |||||||||||| |||||||||||||||||    
T  30289635 caaaagagtcttataattagggacggagggagtatta 30289599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 50 - 82
Target Start/End: Original strand, 30289866 - 30289898
Alignment:
Q  50 caaaagggtcttataattatggacggagggagt 82  Q
    ||||||||||||||||||| |||||||||||||    
T  30289866 caaaagggtcttataattagggacggagggagt 30289898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 47069052 - 47069088
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtatta 86  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  47069052 caaaagggtcttataattagggacggatggagtatta 47069088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 7181422 - 7181347
Alignment:
Q  12 tagcaaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagtatta 86  Q
    |||||||||||||||||||||||| |||||         ||||||||||||||||||| |||||||||||||||||    
T  7181422 tagcaaaggggtcttataaaaagggacaaaaaaatttctcaaaagggtcttataattagggacggagggagtatta 7181347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 88
Target Start/End: Complemental strand, 37728746 - 37728708
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtattact 88  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  37728746 caaaagggtcttataattagggacggagggagtattact 37728708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 22103897 - 22103969
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagtatta 86  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| |||||||||||||||||    
T  22103897 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtatta 22103969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 20862461 - 20862497
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtatta 86  Q
    ||||||||||||||||||| |||||||||||||||||    
T  20862461 caaaagggtcttataattagggacggagggagtatta 20862497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 25149090 - 25149161
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagtatt 85  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| ||||||||||||||||    
T  25149090 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtatt 25149161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 26806148 - 26806112
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtatta 86  Q
    ||||||||||||||||||| |||||||||||||||||    
T  26806148 caaaagggtcttataattagggacggagggagtatta 26806112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 44543851 - 44543780
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagtatt 85  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| ||||||||||||||||    
T  44543851 caaaggggtcttataaaaagggacaaaagaaattctcaaaagggtcttataattagggacggagggagtatt 44543780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 50647717 - 50647681
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtatta 86  Q
    ||||||||||||||||||| |||||||||||||||||    
T  50647717 caaaagggtcttataattagggacggagggagtatta 50647681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 51284066 - 51284102
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtatta 86  Q
    ||||||||||||||||||| |||||||||||||||||    
T  51284066 caaaagggtcttataattagggacggagggagtatta 51284102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 12050396 - 12050431
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtatt 85  Q
    ||||||||||||||||||| ||||||||||||||||    
T  12050396 caaaagggtcttataattagggacggagggagtatt 12050431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 14428873 - 14428908
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtatt 85  Q
    ||||||||||||||||||| ||||||||||||||||    
T  14428873 caaaagggtcttataattagggacggagggagtatt 14428908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 35868051 - 35868121
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| |||||||||||||||    
T  35868051 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtat 35868121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 4024121 - 4024052
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| ||||||||||||||    
T  4024121 caaaggggtcttataaaaagggacaaaaaaaaatctcaaaagggtcttataattagggacggagggagta 4024052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 88
Target Start/End: Original strand, 4759355 - 4759393
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtattact 88  Q
    ||||||||||||||||||| ||||||||| |||||||||    
T  4759355 caaaagggtcttataattagggacggaggtagtattact 4759393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 9499465 - 9499534
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| ||||||||||||||    
T  9499465 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 9499534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 33868712 - 33868746
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||| |||||||||||||||    
T  33868712 caaaagggtcttataattagggacggagggagtat 33868746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 84
Target Start/End: Complemental strand, 43868136 - 43868102
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||| |||||||||||||||    
T  43868136 caaaagggtcttataattagggacggagggagtat 43868102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 4024315 - 4024348
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  4024315 caaaagggtcttataattagggacggagggagta 4024348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 7051688 - 7051760
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagtatta 86  Q
    ||||||||||||||||||||| |||||         ||||||| ||||||||||| |||||||||||||||||    
T  7051688 caaaggggtcttataaaaagggacaaaaaaaattctcaaaaggatcttataattagggacggagggagtatta 7051760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 9780012 - 9779979
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  9780012 caaaagggtcttataattagggacggagggagta 9779979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 10220966 - 10220933
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  10220966 caaaagggtcttataattagggacggagggagta 10220933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 14428643 - 14428610
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  14428643 caaaagggtcttataattagggacggagggagta 14428610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 16435010 - 16434977
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  16435010 caaaagggtcttataattagggacggagggagta 16434977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 21756519 - 21756486
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  21756519 caaaagggtcttataattagggacggagggagta 21756486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 26593769 - 26593802
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  26593769 caaaagggtcttataattagggacggagggagta 26593802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 29719714 - 29719747
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||||||||||||| ||||    
T  29719714 caaaagggtcttataattatggacggaggtagta 29719747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 31531415 - 31531448
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  31531415 caaaagggtcttataattagggacggagggagta 31531448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 36005768 - 36005801
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  36005768 caaaagggtcttataattagggacggagggagta 36005801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 45252806 - 45252773
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  45252806 caaaagggtcttataattagggacggagggagta 45252773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 46049990 - 46050023
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  46049990 caaaagggtcttataattagggacggagggagta 46050023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 46878443 - 46878476
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  46878443 caaaagggtcttataattaaggacggagggagta 46878476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 52059018 - 52058985
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  52059018 caaaagggtcttataattagggacggagggagta 52058985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 54604592 - 54604625
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  54604592 caaaagggtcttataattaaggacggagggagta 54604625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 10015793 - 10015829
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtatta 86  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  10015793 caaaagggtcttataattagggacggaggtagtatta 10015829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 19897840 - 19897876
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtatta 86  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  19897840 caaaagggtcttataattagggacggaggtagtatta 19897876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 26306611 - 26306647
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtatta 86  Q
    ||||||||||||||||||| | |||||||||||||||    
T  26306611 caaaagggtcttataattaggaacggagggagtatta 26306647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 27688019 - 27687983
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtatta 86  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  27688019 caaaagggtcttataattaaggacggaggtagtatta 27687983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 41392884 - 41392920
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtatta 86  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  41392884 caaaagggtcttataattagggacggaggtagtatta 41392920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 48904268 - 48904304
Alignment:
Q  51 aaaagggtcttataattatggacggagggagtattac 87  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  48904268 aaaagggtcttataattagggacggaggtagtattac 48904304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 53361859 - 53361895
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtatta 86  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  53361859 caaaatggtcttataattagggacggagggagtatta 53361895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 36391926 - 36391852
Alignment:
Q  12 tagcaaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagtatt 85  Q
    |||||||||||||||||||||||| |||||         ||||||||||||||||||| ||||||||||||||||    
T  36391926 tagcaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattaaggacggagggagtatt 36391852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 26625967 - 26626039
Alignment:
Q  12 tagcaaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagta 83  Q
    |||||||||||||||||||||||| |||||         ||||||||||||||||||| ||||||||||||||    
T  26625967 tagcaaaggggtcttataaaaagggacaaaaaaaaatctcaaaagggtcttataattagggacggagggagta 26626039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 4035894 - 4035824
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| |||||||||||||||    
T  4035894 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtat 4035824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 20747434 - 20747469
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtatt 85  Q
    ||||||||||||||||||| ||||||||||||||||    
T  20747434 caaaagggtcttataattagggacggagggagtatt 20747469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 45742810 - 45742845
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtatt 85  Q
    ||||||||||||||||||| ||||||||||||||||    
T  45742810 caaaagggtcttataattagggacggagggagtatt 45742845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 5375525 - 5375594
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| ||||||||||||||    
T  5375525 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 5375594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 5743627 - 5743696
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| ||||||||||||||    
T  5743627 caaaggggtcttataaaaagggacaaatttttttctcaaaagggtcttataattagggacggagggagta 5743696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 34273187 - 34273256
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| ||||||||||||||    
T  34273187 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 34273256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 44294858 - 44294789
Alignment:
Q  15 caaaggggtcttataaaaa-ggacaaannnnnnnnncaaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| |||||||         ||||||||||||||||||| ||||||||||||||    
T  44294858 caaaggggtcttataaaaaaggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 44294789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 47806929 - 47806860
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| ||||||||||||||    
T  47806929 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 47806860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 4036089 - 4036122
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  4036089 caaaagggtcttataattagggacggagggagta 4036122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 4549662 - 4549629
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  4549662 caaaagggtcttataattagggacggagggagta 4549629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 9328244 - 9328277
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  9328244 caaaagggtcttataattagggacggagggagta 9328277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 20391441 - 20391474
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  20391441 caaaagggtcttataattagggacggagggagta 20391474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 29014097 - 29014064
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  29014097 caaaagggtcttataattagggacggagggagta 29014064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 30771561 - 30771528
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  30771561 caaaagggtcttataattagggacggagggagta 30771528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 32032997 - 32033030
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  32032997 caaaagggtcttataattagggacggagggagta 32033030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 33413551 - 33413518
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  33413551 caaaagggtcttataattagggacggagggagta 33413518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 35675924 - 35675957
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  35675924 caaaagggtcttataattagggacggagggagta 35675957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 52978015 - 52977982
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  52978015 caaaagggtcttataattagggacggagggagta 52977982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 55632032 - 55631999
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  55632032 caaaagggtcttataattagggacggagggagta 55631999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 17610024 - 17610060
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtatta 86  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  17610024 caaaaggatcttataattagggacggagggagtatta 17610060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 52181190 - 52181226
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtatta 86  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  52181190 caaaatggtcttataattatggacggaggtagtatta 52181226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 52870677 - 52870641
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtatta 86  Q
    |||||||||||||||||||  ||||||||||||||||    
T  52870677 caaaagggtcttataattagagacggagggagtatta 52870641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 53277190 - 53277222
Alignment:
Q  51 aaaagggtcttataattatggacggagggagta 83  Q
    |||||||||||||||||| ||||||||||||||    
T  53277190 aaaagggtcttataattagggacggagggagta 53277222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 19920635 - 19920563
Alignment:
Q  12 tagcaaaggggtcttataaaaagga-caaannnnnnnnncaaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||||||||| ||||         ||||||||||||||||||| ||||||||||||||    
T  19920635 tagcaaaggggtcttataaaaaggaacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 19920563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 39871581 - 39871653
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagtatta 86  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| |||||||||||||||||    
T  39871581 caaaggggtcttataaaaagggacaaaaaaatttctcaaaagggtcttataattagggacggagggagtatta 39871653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 32814466 - 32814430
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtatta 86  Q
    ||||||||||||||||||| |||||||||||||||||    
T  32814466 caaaagggtcttataattagggacggagggagtatta 32814430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 33858870 - 33858906
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtatta 86  Q
    ||||||||||||||||||| |||||||||||||||||    
T  33858870 caaaagggtcttataattagggacggagggagtatta 33858906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 38858367 - 38858297
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| |||||||||||||||    
T  38858367 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtat 38858297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 20075111 - 20075145
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||| |||||||||||||||    
T  20075111 caaaagggtcttataattagggacggagggagtat 20075145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 21295220 - 21295151
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| ||||||||||||||    
T  21295220 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 21295151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 28060981 - 28061015
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||| |||||||||||||||    
T  28060981 caaaagggtcttataattagggacggagggagtat 28061015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 29286041 - 29286075
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||| |||||||||||||||    
T  29286041 caaaagggtcttataattagggacggagggagtat 29286075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 36698135 - 36698169
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||| |||||||||||||||    
T  36698135 caaaagggtcttataattagggacggagggagtat 36698169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 40300299 - 40300230
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| ||||||||||||||    
T  40300299 caaaggggtcttataaaaagggacaaaaaaaaatctcaaaagggtcttataattagggacggagggagta 40300230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 41252329 - 41252398
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| ||||||||||||||    
T  41252329 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 41252398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 26255129 - 26255096
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  26255129 caaaagggtcttataattagggacggagggagta 26255096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 32872379 - 32872412
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  32872379 caaaagggtcttataattagggacggagggagta 32872412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 38428411 - 38428444
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  38428411 caaaagggtcttataattagggacggagggagta 38428444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 39197751 - 39197718
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  39197751 caaaagggtcttataattagggacggagggagta 39197718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 41003158 - 41003191
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  41003158 caaaagggtcttataattaaggacggagggagta 41003191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 41026100 - 41026133
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  41026100 caaaagggtcttataattagggacggagggagta 41026133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 48521062 - 48521029
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  48521062 caaaagggtcttataattagggacggagggagta 48521029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 34012521 - 34012557
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtatta 86  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  34012521 caaaagggtcttataattagggacggaggtagtatta 34012557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 19097766 - 19097842
Alignment:
Q  12 tagcaaaggggtcttataaaaa-ggacaaannnnnnnnncaaaagggtcttataattatggacggagggagtattac 87  Q
    |||||||||||||||||||||| |||||||         |||||||||||||||||||  |||||||||||||||||    
T  19097766 tagcaaaggggtcttataaaaaaggacaaaaaaaattctcaaaagggtcttataattagagacggagggagtattac 19097842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 86
Target Start/End: Original strand, 12144043 - 12144078
Alignment:
Q  51 aaaagggtcttataattatggacggagggagtatta 86  Q
    |||||||||||||||||| |||||||||||||||||    
T  12144043 aaaagggtcttataattagggacggagggagtatta 12144078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 84
Target Start/End: Complemental strand, 4844433 - 4844399
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||| |||||||||||||||    
T  4844433 caaaagggtcttataattagggacggagggagtat 4844399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 9038711 - 9038642
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| ||||||||||||||    
T  9038711 caaaggggtcttataaaaagggacaaatgattttttcaaaagggtcttataattagggacggagggagta 9038642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 84
Target Start/End: Complemental strand, 30248680 - 30248646
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||| |||||||||||||||    
T  30248680 caaaagggtcttataattagggacggagggagtat 30248646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 34301800 - 34301869
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| ||||||||||||||    
T  34301800 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 34301869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 34741730 - 34741764
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||| |||||||||||||||    
T  34741730 caaaagggtcttataattagggacggagggagtat 34741764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 231109 - 231142
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  231109 caaaagggtcttataattagggacggagggagta 231142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 8743221 - 8743188
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  8743221 caaaagggtcttataattagggacggagggagta 8743188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 9388562 - 9388529
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  9388562 caaaagggtcttataattagggacggagggagta 9388529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 11847836 - 11847869
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  11847836 caaaagggtcttataattagggacggagggagta 11847869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 13648133 - 13648166
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  13648133 caaaagggtcttataattaaggacggagggagta 13648166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 23398143 - 23398176
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  23398143 caaaagggtcttataattagggacggagggagta 23398176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 13321330 - 13321366
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtatta 86  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  13321330 caaaagggtcttataattagggacggaggtagtatta 13321366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 25045647 - 25045683
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtatta 86  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  25045647 caaaagggtcttataattagggacggaggtagtatta 25045683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 15228114 - 15228189
Alignment:
Q  12 tagcaaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagtatta 86  Q
    |||||||||||||||||||||||| |||||         ||||||| ||||||||||| |||||||||||||||||    
T  15228114 tagcaaaggggtcttataaaaagggacaaaaaaaattctcaaaaggatcttataattagggacggagggagtatta 15228189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 34883816 - 34883887
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagtatt 85  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| ||||||||||||||||    
T  34883816 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtatt 34883887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 8841625 - 8841695
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| |||||||||||||||    
T  8841625 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattaaggacggagggagtat 8841695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 11201716 - 11201681
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtatt 85  Q
    ||||||||||||||||||| ||||||||||||||||    
T  11201716 caaaagggtcttataattagggacggagggagtatt 11201681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 20252279 - 20252209
Alignment:
Q  15 caaaggggtcttataaaaag-gacaaannnnnnnnncaaaagggtcttataattatggacggagggagtat 84  Q
    |||||||||||||||||||| ||||||         ||||||||||||||||||| |||||||||||||||    
T  20252279 caaaggggtcttataaaaagtgacaaaagaaattctcaaaagggtcttataattagggacggagggagtat 20252209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 40607771 - 40607701
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| |||||||||||||||    
T  40607771 caaaggggtcttataaaaagggacaaaaaaatttctcaaaagggtcttataattagggacggagggagtat 40607701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 2438294 - 2438225
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| ||||||||||||||    
T  2438294 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 2438225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 84
Target Start/End: Complemental strand, 16108248 - 16108214
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||| |||||||||||||||    
T  16108248 caaaagggtcttataattagggacggagggagtat 16108214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 22182929 - 22182963
Alignment:
Q  51 aaaagggtcttataattatggacggagggagtatt 85  Q
    |||||||||||||||||| ||||||||||||||||    
T  22182929 aaaagggtcttataattagggacggagggagtatt 22182963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 23789038 - 23788969
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| ||||||||||||||    
T  23789038 caaaggggtcttataaaaagggacaaaaaaatttctcaaaagggtcttataattaaggacggagggagta 23788969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 27560275 - 27560206
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| ||||||||||||||    
T  27560275 caaaggggtcttataaaaagggacaaaaatttttctcaaaagggtcttataattagggacggagggagta 27560206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 34062669 - 34062703
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||| |||||||||||||||    
T  34062669 caaaagggtcttataattagggacggagggagtat 34062703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 84
Target Start/End: Complemental strand, 39833772 - 39833738
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||| |||||||||||||||    
T  39833772 caaaagggtcttataattagggacggagggagtat 39833738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 84
Target Start/End: Complemental strand, 41450549 - 41450515
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||| |||||||||||||||    
T  41450549 caaaagggtcttataattagggacggagggagtat 41450515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 2438489 - 2438522
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  2438489 caaaagggtcttataattagggacggagggagta 2438522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 5664707 - 5664635
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagtatta 86  Q
    ||||||||||||||||||||| |||||         ||||| ||||||||||||| |||||||||||||||||    
T  5664707 caaaggggtcttataaaaagggacaaaaaaaattctcaaaaaggtcttataattagggacggagggagtatta 5664635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 7491877 - 7491844
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  7491877 caaaagggtcttataattagggacggagggagta 7491844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 7492108 - 7492141
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  7492108 caaaagggtcttataattagggacggagggagta 7492141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 8716896 - 8716929
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  8716896 caaaagggtcttataattagggacggagggagta 8716929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 17408298 - 17408331
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  17408298 caaaagggtcttataattagggacggagggagta 17408331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 22897655 - 22897688
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  22897655 caaaagggtcttataattagggacggagggagta 22897688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 34113790 - 34113823
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  34113790 caaaagggtcttataattagggacggagggagta 34113823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 36131032 - 36131065
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  36131032 caaaagggtcttataattagggacggagggagta 36131065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 45474384 - 45474351
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  45474384 caaaagggtcttataattagggacggagggagta 45474351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 8841429 - 8841393
Alignment:
Q  51 aaaagggtcttataattatggacggagggagtattac 87  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  8841429 aaaagagtcttataattagggacggagggagtattac 8841393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 259126 - 259161
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtatt 85  Q
    ||||||||||||||||||| ||||||||||||||||    
T  259126 caaaagggtcttataattagggacggagggagtatt 259161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 9020727 - 9020692
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtatt 85  Q
    ||||||||||||||||||| ||||||||||||||||    
T  9020727 caaaagggtcttataattagggacggagggagtatt 9020692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 9828462 - 9828388
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagtattact 88  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| |||||||||||||| ||||    
T  9828462 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtactact 9828388  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 16127292 - 16127257
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtatt 85  Q
    ||||||||||||||||||| ||||||||||||||||    
T  16127292 caaaagggtcttataattagggacggagggagtatt 16127257  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 22527761 - 22527691
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| |||||||||||||||    
T  22527761 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtat 22527691  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 34662273 - 34662203
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| |||||||||||||||    
T  34662273 caaaggggtcttataaaaagggacaaaaaaaactctcaaaagggtcttataattagggacggagggagtat 34662203  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 40004377 - 40004447
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| |||||||||||||||    
T  40004377 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtat 40004447  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 186362 - 186396
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||| |||||||||||||||    
T  186362 caaaagggtcttataattagggacggagggagtat 186396  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 1266018 - 1265949
Alignment:
Q  15 caaaggggtcttataaaaagg-acaaannnnnnnnncaaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||||| |||||         ||||||||||||||||||| ||||||||||||||    
T  1266018 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 1265949  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 6673232 - 6673266
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||| |||||||||||||||    
T  6673232 caaaagggtcttataattagggacggagggagtat 6673266  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 84
Target Start/End: Complemental strand, 14913681 - 14913647
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||| |||||||||||||||    
T  14913681 caaaagggtcttataattagggacggagggagtat 14913647  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 26894877 - 26894911
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||| |||||||||||||||    
T  26894877 caaaagggtcttataattagggacggagggagtat 26894911  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 7951595 - 7951562
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  7951595 caaaagggtcttataattagggacggagggagta 7951562  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 9828657 - 9828690
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  9828657 caaaagggtcttataattagggacggagggagta 9828690  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 10734527 - 10734560
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  10734527 caaaagggtcttataattagggacggagggagta 10734560  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 16440963 - 16440930
Alignment:
Q  51 aaaagggtcttataattatggacggagggagtat 84  Q
    |||||||||||||||||| |||||||||||||||    
T  16440963 aaaagggtcttataattagggacggagggagtat 16440930  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 41687116 - 41687149
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||||||||||||| ||||    
T  41687116 caaaagggtcttataattatggacggaggtagta 41687149  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 3497573 - 3497537
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtatta 86  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  3497573 caaaagggtcttataattagggacggatggagtatta 3497537  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 16153259 - 16153295
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtatta 86  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  16153259 caaaagggtcttataattagggacggatggagtatta 16153295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 41383945 - 41383909
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtatta 86  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  41383945 caaaaggatcttataattagggacggagggagtatta 41383909  T

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Target: scaffold0122 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 84
Target Start/End: Complemental strand, 12098 - 12064
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||| |||||||||||||||    
T  12098 caaaagggtcttataattagggacggagggagtat 12064  T

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Target: scaffold0029 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 51686 - 51720
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||| |||||||||||||||    
T  51686 caaaagggtcttataattagggacggagggagtat 51720  T

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Target: scaffold0012 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 84
Target Start/End: Complemental strand, 47673 - 47639
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||| |||||||||||||||    
T  47673 caaaagggtcttataattagggacggagggagtat 47639  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 355335 - 355369
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtat 84  Q
    ||||||||||||||||||| |||||||||||||||    
T  355335 caaaagggtcttataattagggacggagggagtat 355369  T

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Target: scaffold0604 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 3786 - 3819
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  3786 caaaagggtcttataattagggacggagggagta 3819  T

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Target: scaffold0308 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 14352 - 14385
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  14352 caaaagggtcttataattaaggacggagggagta 14385  T

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Target: scaffold0025 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 65411 - 65378
Alignment:
Q  50 caaaagggtcttataattatggacggagggagta 83  Q
    ||||||||||||||||||| ||||||||||||||    
T  65411 caaaagggtcttataattagggacggagggagta 65378  T

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Target: scaffold0237 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 6613 - 6649
Alignment:
Q  50 caaaagggtcttataattatggacggagggagtatta 86  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  6613 caaaagggtcttataattagggacggaggtagtatta 6649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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