View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15681_high_6 (Length: 334)
Name: NF15681_high_6
Description: NF15681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15681_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 28 - 312
Target Start/End: Original strand, 32552618 - 32552921
Alignment:
| Q |
28 |
aattcaagttacctgactcttttcaattgaatcatactcaacacatat-aaaaagaattaccgtacgatttcagctagt----------aaatatgtttg |
116 |
Q |
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|||||||||||| |||||||||| | ||||||||||||||| ||| || |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32552618 |
aattcaagttacttgactcttttaacttgaatcatactcaagacaaatcaaaaagaattaccgtacgatttcagctagtgttgaaaagtaaatatgtttg |
32552717 |
T |
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| Q |
117 |
cttaataac-----tgaaaattatccaaagtaatagaaatcattata-----cagctcaaaagacagaacaaaagtactgttaaaatgtttgatttcatt |
206 |
Q |
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|||||| | |||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32552718 |
cttaattatagtattgaacattatccaaagtaatagaaatcattatattatacagctcaa--gacagaacaaaagtactgttaaaatgtttgatttcatt |
32552815 |
T |
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| Q |
207 |
tatagtgtcgccgatggcagcacgatgaggtggtgatctaatccgccatgatacggacaactaggtcactagttgaattatcttggatgttgtagttggc |
306 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| || ||||| |||||||| |||| |
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| T |
32552816 |
tatagggtcgccgatggcagcacgatgaggtggtgatctaatccgccatgatacggacaacgaggtcaatagttgacttgtcttgtatgttgtaactggc |
32552915 |
T |
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| Q |
307 |
aagggt |
312 |
Q |
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|||||| |
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| T |
32552916 |
aagggt |
32552921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 103 - 316
Target Start/End: Original strand, 32549209 - 32549423
Alignment:
| Q |
103 |
agtaaatatgtttgcttaataactgaaaattatccaaagtaatagaaatcattatacagctcaaaagacagaacaaaagtactgttaaaatgtttgattt |
202 |
Q |
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||||||||||||| |||| |||||||| |||| |||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32549209 |
agtaaatatgtttatttaaatgctgaaaatcatcccaagtaaaagaaatcatcatacagctcaa--gacagaacaaaagtactgttaaaatgtttgattt |
32549306 |
T |
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| Q |
203 |
catttatagtgtcgccgatggc---agcacgatgaggtggtgatctaatccgccatgatacggacaactaggtcactagttgaattatcttggatgttgt |
299 |
Q |
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|||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
32549307 |
catttatagtgtcgcctatggcggcagcaagatgaggtggtgatctaatccgccatgatacggacaacgaggtcaatagttgaattatcttggatgttgt |
32549406 |
T |
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| Q |
300 |
agttggcaagggtgtgg |
316 |
Q |
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||||||||||||||||| |
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| T |
32549407 |
agttggcaagggtgtgg |
32549423 |
T |
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Back To:
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