View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15681_low_1 (Length: 921)
Name: NF15681_low_1
Description: NF15681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15681_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 816; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 816; E-Value: 0
Query Start/End: Original strand, 18 - 915
Target Start/End: Complemental strand, 52233881 - 52232983
Alignment:
| Q |
18 |
ctgaaagctggacaaaatgttccaaaagtgtctaacttggcaaccagaaagagtaagcttgtttctggtgaagaacttggagatggtgttcgaaggcaag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
52233881 |
ctgaaagctggacaaaatgttccaaaagtgtctaacttggcaaccagaaagagtaagcttgtttctggtgaagaacttggagatggtgttcggaggcaag |
52233782 |
T |
|
| Q |
118 |
gcaggacggggcgcagtctcaatgccacaaggtcactggcaccaatgacatctgagaagcttggaaaaataggaactgcgaaacaactaagaagtgcaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52233781 |
gcaggacggggcgcagtctcaatgccacaaggtcactggcaccaatgacatctgagaagcttggaaaaataggaactgcgaaacaactaagaagtgcaag |
52233682 |
T |
|
| Q |
218 |
acaaggatgtgacaagaatgaaaggttaaaatgcttctatctcctgctannnnnnnnnnnnn-gagcacatgaaccgaagtcttaaggtttttatggaat |
316 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
52233681 |
acaaggatgtgacaagaatgaaaggttaaaatgcttctatctcctgctaatttttttttttttgagcacatgaaccgaagtcttaaggtttttatggaat |
52233582 |
T |
|
| Q |
317 |
ccttgcagcaaggtcggtcgtccaccaacaaggaaactttctgatcgtaaggcctatgctcgtcaaaagcctactgccatcagtgcagcagcagattatt |
416 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52233581 |
ccttgcagcaaggtcggtcgtccaccaacaaggaagctttctgatcgtaaggcctatgctcgtcaaaagcctactgccatcagtgcagcagcagattatt |
52233482 |
T |
|
| Q |
417 |
ttggtactagttaaaacattagaaaattaaataacacaacatttgtatgtttagtgtaagtatccttgttcannnnnnnngtttcgttggtttagttggg |
516 |
Q |
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| T |
52233481 |
ttggtactagttaaaacattagaaaattaaataacacaacatttgtatgtttagtgtaagtatccttgttcattttttttgtttcgttggtttagttggg |
52233382 |
T |
|
| Q |
517 |
tcagtagatggacacggggagttattggctgctgtaaagggtgttatcaaatctggtataaatcgtactaaaactttataactattcttcctaaataatt |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52233381 |
tcagtagatggacacggggagttattggctgctgtaaagggtgttatcaaatctggtataaatcgtactaaaactttataactattcttcctaaataatt |
52233282 |
T |
|
| Q |
617 |
tccccctgatggagtaatttaaagcatttttattactgcagcctactccttctccagcccattttggaagcagatggaacctttctttagtatgataccc |
716 |
Q |
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| T |
52233281 |
tccccctgatggagtaatttaaagcatttttattactgcagcctactccttctccagcccattttggaagcagatggaacctttctttagtatgataccc |
52233182 |
T |
|
| Q |
717 |
gaggaagatattacttactggaagcagaaggtactgatattcaatttttcaatgatggagttcacttttcttttttaacgtttgtgacagatcagtagtc |
816 |
Q |
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| T |
52233181 |
gaggaagatattacttactggaagcagaaggtactgatattcaatttttcaatgatggagttcacttttcttttttaacgtttgtgacagatcagtagtc |
52233082 |
T |
|
| Q |
817 |
atgcttgactattgacacttagtcacgacacttccataggaattatgatggaaattagtacattgcagcgatgctttagatttttgtgatgatgtccat |
915 |
Q |
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| T |
52233081 |
atgcttgactattgacacttagtcacgacacttccataggaattatgatggaaattagtacattgcagcgatgctttagatttttgtgatggtgtccat |
52232983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 635 - 733
Target Start/End: Original strand, 51527895 - 51527993
Alignment:
| Q |
635 |
ttaaagcatttttattactgcagcctactccttctccagcccattttggaagcagatggaacctttctttagtatgatacccgaggaagatattactta |
733 |
Q |
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|||||| ||| ||| |||||||| ||| ||||||| ||||||||||||||||||||||||||||||||| | ||||||| ||||||||| |||||| |
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| T |
51527895 |
ttaaagtattcttagtactgcagtctattccttctgcagcccattttggaagcagatggaacctttcttctgcttgataccttaggaagatactactta |
51527993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 838 - 915
Target Start/End: Original strand, 51528064 - 51528140
Alignment:
| Q |
838 |
gtcacgacacttccataggaattatgatggaaattagtacattgcagcgatgctttagatttttgtgatgatgtccat |
915 |
Q |
| |
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|||||||| |||||| | |||| |||| |||||||||| |||||| | ||| ||||||||||||||||| ||||||| |
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| T |
51528064 |
gtcacgacgcttccaaatgaatcttgatagaaattagtaaattgcatcaatg-tttagatttttgtgatggtgtccat |
51528140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 20 - 245
Target Start/End: Original strand, 17755969 - 17756200
Alignment:
| Q |
20 |
gaaagctggacaaaatgttccaaaagtgtctaacttgg------caaccagaaagagtaagcttgtttctggtgaagaacttggagatggtgttcgaagg |
113 |
Q |
| |
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|||||||||||||||||||| ||| ||||||||| ||| |||| | ||| | |||||||| || | ||||||| |||||| |||||||| ||| |
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| T |
17755969 |
gaaagctggacaaaatgttcaaaaggtgtctaacatggttcctccaacaaaaaaaaataagcttgcatccagggaagaacgtggagacggtgttcggagg |
17756068 |
T |
|
| Q |
114 |
caaggcaggacggggcgcagtctcaatgccacaaggtcactggcaccaatgacatctgagaagcttggaaaaataggaactgcgaaacaactaagaagtg |
213 |
Q |
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||||| || || ||||| | | | ||| ||||||||| || | |||||||||||||||||||||||||| ||||| || | ||||| || |||||| |
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| T |
17756069 |
caagggagaacagggcggaattttcctgctacaaggtcattgaccccaatgacatctgagaagcttggaaacatagggaccgtaaaacagctcagaagtt |
17756168 |
T |
|
| Q |
214 |
caagacaaggatgtgacaagaatgaaaggtta |
245 |
Q |
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|||||| ||||| ||| |||| |||||||||| |
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| T |
17756169 |
caagactaggatttgaaaagagtgaaaggtta |
17756200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 309 - 386
Target Start/End: Original strand, 17756362 - 17756439
Alignment:
| Q |
309 |
tatggaatccttgcagcaaggtcggtcgtccaccaacaaggaaactttctgatcgtaaggcctatgctcgtcaaaagc |
386 |
Q |
| |
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|||| ||||| |||||||||| |||||||||||||| ||||||||||||||||| ||||| ||| |||||||||||| |
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| T |
17756362 |
tatgaaatccgtgcagcaaggcaggtcgtccaccaaccaggaaactttctgatcggaaggcatatactcgtcaaaagc |
17756439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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