View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15681_low_11 (Length: 234)
Name: NF15681_low_11
Description: NF15681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15681_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 41413792 - 41413842
Alignment:
| Q |
38 |
tcgaagaatatgataggtatcctctgcaagtgcccttgtggctgcaacctg |
88 |
Q |
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| T |
41413792 |
tcgaacaatatgataggtatcctctgcaagtgcccttgtggctgcaacctg |
41413842 |
T |
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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 41413923 - 41413964
Alignment:
| Q |
173 |
ttacagctccaatcttcaaaaaaccatcaacagtgaggttaa |
214 |
Q |
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| T |
41413923 |
ttacagctccaatcttcaaaaaaccatcaacagtgaggttaa |
41413964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 41421052 - 41421102
Alignment:
| Q |
38 |
tcgaagaatatgataggtatcctctgcaagtgcccttgtggctgcaacctg |
88 |
Q |
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| T |
41421052 |
tcgaacaatatgaaaggtatcttctgcaagtgcccttgtagctgcaacctg |
41421102 |
T |
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