View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15681_low_3 (Length: 484)
Name: NF15681_low_3
Description: NF15681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15681_low_3 |
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| [»] chr7 (5 HSPs) |
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| [»] scaffold0128 (1 HSPs) |
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| [»] scaffold0097 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 411; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 17 - 484
Target Start/End: Original strand, 22534789 - 22535255
Alignment:
| Q |
17 |
aaaagcaaccaagaagatcgagcaattctttataaccggacaactaacaaagcaaagaaaactagaattaacagaaagatacattggttaatggtcgatt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22534789 |
aaaagcaaccaagaagatcgagcaattctttataaccggataactaacaaagcaaagaaaactagaattaacagaaagatacattggttaatggtcgatt |
22534888 |
T |
|
| Q |
117 |
atgtcgaaagcttggtttcaccttcttgaaagtaagttcttatctccagtaagagatatactattgtgaatttttgttatagatatgcttgaaagtaagt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22534889 |
atgtcgaaagcttggtttcaccttcttgaaagtaagttcttatctccagtaagagatatactattgtgaatttttgttatagacatgcttgaaagtaagt |
22534988 |
T |
|
| Q |
217 |
acttggtttcagttgtgtgattatttactttctttcgaattttttcatagatatgctgagtcaatcgattgatcctattgatatgtttataactcaatta |
316 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
22534989 |
acttggtttcagttgtgtgattatttactttccttcgaattttttcatagatatgctgaatcaatcgattgatcctattgatatgtttataactcaatta |
22535088 |
T |
|
| Q |
317 |
ttatctttgcttattttataaagcatataatttttgcaaatcaatatataatgaatattccnnnnnnnnnnnnaagcaatagttgttaatcctctaagtt |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
22535089 |
ttatctttgcttattttataaagcatataatttttgcaaatcaatatataatgaatattcc-tttttttttttaagcaatagttgttaatcctctaagtt |
22535187 |
T |
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| Q |
417 |
aatcagctgcatatagttgcttgtagctacaaaatttattttctcatctcaaactgattgtggacgtt |
484 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22535188 |
aatcagctgcatatagttgcttgtagctacaaaatttattttctcatctcaaactgattgtggacgtt |
22535255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 204 - 373
Target Start/End: Complemental strand, 22524953 - 22524787
Alignment:
| Q |
204 |
cttgaaagtaagtacttggtttcagttgtgtgattatttactttctttcgaa--ttttttcatagatatgctgagtcaatcgattgatcctattgatatg |
301 |
Q |
| |
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||||||||||||| ||| ||||||| ||||||||||||||||| ||| || ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
22524953 |
cttgaaagtaagttcttc--ttcagttatgtgattatttactttccttcaaaacttttttcatagatatgctggatcaatcgattgatcctattgatatg |
22524856 |
T |
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| Q |
302 |
tttataactcaattattatctttgcttattttataaagcatataatttttgcaaatcaatatataatgaata |
373 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
22524855 |
tttataactcaattattatctttgcttatt---taaagcatataatttttgcaaatcaataaataatgaata |
22524787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 22525079 - 22524937
Alignment:
| Q |
17 |
aaaagcaaccaagaagatcgagcaattctttataaccggaca--actaacaaagcaaagaaaactagaattaacagaaagatacattggttaatggtcga |
114 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||| | |||| |||||||||||||||||||||||||| |||||||| |||||||||||| || |
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| T |
22525079 |
aaaagcaaccaagaagatcgagcaattctctataaccggagagaactagcaaagcaaagaaaactagaattaacaaaaagatacgttggttaatggtgga |
22524980 |
T |
|
| Q |
115 |
ttatgtcgaaagcttggtttcaccttcttgaaagtaagttctt |
157 |
Q |
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|||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
22524979 |
ttatgttgaaagcttggtttcaacttcttgaaagtaagttctt |
22524937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 47 - 157
Target Start/End: Complemental strand, 21218584 - 21218471
Alignment:
| Q |
47 |
tataaccggacaactaacaaagcaaagaaaactagaattaacagaaagatacattggttaatggtc---gattatgtcgaaagcttggtttcaccttctt |
143 |
Q |
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|||||||| | ||||||||||| ||||||| |||||||||||| ||||||| ||||| ||| |||||||||||||||||||||||| |||||| |
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| T |
21218584 |
tataaccgaagaactaacaaagtaaagaaagctagaattaacaaaaagataagttggtcctcagtctatgattatgtcgaaagcttggtttcaacttctt |
21218485 |
T |
|
| Q |
144 |
gaaagtaagttctt |
157 |
Q |
| |
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|||||||||||||| |
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|
| T |
21218484 |
gaaagtaagttctt |
21218471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 21220960 - 21220920
Alignment:
| Q |
116 |
tatgtcgaaagcttggtttcaccttcttgaaagtaagttct |
156 |
Q |
| |
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|||||||||||||||||| || ||||||| ||||||||||| |
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| T |
21220960 |
tatgtcgaaagcttggttccaacttcttggaagtaagttct |
21220920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 35 - 157
Target Start/End: Original strand, 4319 - 4444
Alignment:
| Q |
35 |
cgagcaattctttataaccggacaactaacaaagcaaagaaaactagaattaacagaaagatacattggtt---aatggtcgattatgtcgaaagcttgg |
131 |
Q |
| |
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||||| ||||||||||||| || ||| ||||||||||||||||||| | | |||| |||||||| |||||| |||| ||||||||||||||||||| |
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| T |
4319 |
cgagcgattctttataacctgagaacaaacaaagcaaagaaaactacattcaacaaaaagatacgttggttcccaatgaaagattatgtcgaaagcttgg |
4418 |
T |
|
| Q |
132 |
tttcaccttcttgaaagtaagttctt |
157 |
Q |
| |
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||||| |||||||||||||||||||| |
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| T |
4419 |
tttcaacttcttgaaagtaagttctt |
4444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 41 - 157
Target Start/End: Original strand, 42298299 - 42298418
Alignment:
| Q |
41 |
attctttataaccggacaactaacaaagcaaagaaaactagaattaacagaaagatacattggtt---aatggtcgattatgtcgaaagcttggtttcac |
137 |
Q |
| |
|
||||| ||||||| || ||| |||| ||||||||||||||| ||||||||||||||| ||||| |||| |||||||||||||||||||||||| |
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| T |
42298299 |
attctctataacctgagaacaaacagagcaaagaaaactaggattaacagaaagatatgttggtcctcaatgaaagattatgtcgaaagcttggtttcaa |
42298398 |
T |
|
| Q |
138 |
cttcttgaaagtaagttctt |
157 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
42298399 |
cttcttgaaagtaagttctt |
42298418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 38 - 157
Target Start/End: Original strand, 2911254 - 2911376
Alignment:
| Q |
38 |
gcaattctttataaccggacaactaacaaagcaaagaaaactagaattaacagaaagatacattggtt---aatggtcgattatgtcgaaagcttggttt |
134 |
Q |
| |
|
|||||||| |||||||||| |||||||| ||||||||||||||||||| ||| | ||||| |||||| ||| ||||||||| ||||||||||| | |
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|
| T |
2911254 |
gcaattctctataaccggagaactaacagagcaaagaaaactagaattgacaacaggatacgttggttttctatgaacgattatgtagaaagcttggtat |
2911353 |
T |
|
| Q |
135 |
caccttcttgaaagtaagttctt |
157 |
Q |
| |
|
|| |||||||||||||||||||| |
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|
| T |
2911354 |
caacttcttgaaagtaagttctt |
2911376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 16172 - 16131
Alignment:
| Q |
114 |
attatgtcgaaagcttggtttcaccttcttgaaagtaagttc |
155 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
16172 |
attatgtcgaaagcttggtttcaacttgttgaaagtaagttc |
16131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 20712333 - 20712292
Alignment:
| Q |
114 |
attatgtcgaaagcttggtttcaccttcttgaaagtaagttc |
155 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
20712333 |
attatgtcgaaagcttggtttcaacttgttgaaagtaagttc |
20712292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 18908580 - 18908539
Alignment:
| Q |
113 |
gattatgtcgaaagcttggtttcaccttcttgaaagtaagtt |
154 |
Q |
| |
|
|||||||| ||||||||||||||| | ||||||||||||||| |
|
|
| T |
18908580 |
gattatgttgaaagcttggtttcaacctcttgaaagtaagtt |
18908539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 27618724 - 27618766
Alignment:
| Q |
113 |
gattatgtcgaaagcttggtttcaccttcttgaaagtaagttc |
155 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
27618724 |
gattatgttgaaagcttggtttcaatttcttgaaagtaagttc |
27618766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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