View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15681_low_4 (Length: 452)
Name: NF15681_low_4
Description: NF15681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15681_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 17 - 437
Target Start/End: Original strand, 36367899 - 36368316
Alignment:
| Q |
17 |
ctttgaaatatattcctagccaggtgcatgtacggaaagaagtcattctgcatgcactagaatattcttcactacctagtcagcagtgtccatgatttat |
116 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||| |
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| T |
36367899 |
ctttgaaatatattcctagccagctacatgtacggaaagaagtcattctgcatgcactggaatattcttcacttcctagtcagcagtgttcatgatttat |
36367998 |
T |
|
| Q |
117 |
tgtgtggaaaatataataaagcagccatccaaactatgtgttgttgaagagtaaaatttttcagttggagtatttctattttcttcttttcataaagagg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36367999 |
tgtgtggaaaatataataaagcagccatccaaactatgtgttgttgaagagtaaaatttttcagttggagtatttctattttcttcttttcataaagagg |
36368098 |
T |
|
| Q |
217 |
agcttaatggactctgctaaagctcatctctaccttgtcacaacccaaaatcttaaacacaacaagttgttattattacataatactaataattggctac |
316 |
Q |
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| T |
36368099 |
aacttaatggactctgctaaagctcatctctaccttgtcacaacccaaaatcataaac---acaagttgttattattacataatactaataattggctac |
36368195 |
T |
|
| Q |
317 |
ttaattatttgattctactccttcttgccttttctttttgttcctgttcttctgatatcatatcttctgatacacgcataagagatggtgagattcttat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36368196 |
ttaattatttgattctactccttcttgccttttctttttgttcctgttcttctgatatcatatcttctgatacacgcataagagatggtgagattcttat |
36368295 |
T |
|
| Q |
417 |
atctaaatctaaaacatttgc |
437 |
Q |
| |
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||||||||||||||||||||| |
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| T |
36368296 |
atctaaatctaaaacatttgc |
36368316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 194 - 437
Target Start/End: Complemental strand, 55676838 - 55676622
Alignment:
| Q |
194 |
attttcttcttttcataaagaggagcttaatggactctgctaaagctcatctctaccttgtcacaacccaaaatcttaaacacaacaagttgttattatt |
293 |
Q |
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||||||||||| |||||||||||| ||||| ||||||| ||||| ||||||||||||||| |||||||||||||| | |||||||||||||||||||||| |
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| T |
55676838 |
attttcttcttctcataaagaggaacttaaaggactctcctaaaactcatctctaccttgccacaacccaaaatcattaacacaacaagttgttattatt |
55676739 |
T |
|
| Q |
294 |
acataatactaataattggctacttaattatttgattctactccttcttgccttttctttttgttcctgttcttctgatatcatatcttctgatacacgc |
393 |
Q |
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||| |||||||| ||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||| || |
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| T |
55676738 |
acacaatactaacaattg------------cttgattctactcattcttgccttttctttttgttcctgt---------------tcttctgatacatgc |
55676666 |
T |
|
| Q |
394 |
ataagagatggtgagattcttatatctaaatctaaaacatttgc |
437 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
55676665 |
ataaaagatggtgagattcttatatctaaatctaaaacctttgc |
55676622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 303 - 437
Target Start/End: Original strand, 36396537 - 36396671
Alignment:
| Q |
303 |
taataattggctacttaattatttgattctactccttcttgccttttctttttgttcctgttcttctgatatcatatcttctgatacacgcataagagat |
402 |
Q |
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|||||||| || ||||| | |||||||||||| ||||| | || |||||||| || ||||||||||||| ||||||| ||| | | | |||||||| |
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| T |
36396537 |
taataatttacttcttaactctttgattctactacttctcacattctctttttgctcttgttcttctgataccatatctattgacaaaaccttaagagat |
36396636 |
T |
|
| Q |
403 |
ggtgagattcttatatctaaatctaaaacatttgc |
437 |
Q |
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| T |
36396637 |
ggtgaacttcttgtttctaaatctaaaacatttgc |
36396671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 324 - 437
Target Start/End: Original strand, 36372819 - 36372932
Alignment:
| Q |
324 |
tttgattctactccttcttgccttttctttttgttcctgttcttctgatatcatatcttctgatacacgcataagagatggtgagattcttatatctaaa |
423 |
Q |
| |
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||||||||||||||||| |||| || ||||| || |||||| |||||||||||||| |||| | || ||||||||||||||| ||||| | || ||| |
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| T |
36372819 |
tttgattctactccttccgaccttctccttttgctcttgttctactgatatcatatctactgacaaaccaataagagatggtgagcttcttgtttccaaa |
36372918 |
T |
|
| Q |
424 |
tctaaaacatttgc |
437 |
Q |
| |
|
|| ||||| ||||| |
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| T |
36372919 |
tccaaaacttttgc |
36372932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 437
Target Start/End: Original strand, 36410828 - 36410921
Alignment:
| Q |
344 |
ccttttctttttgttcctgttcttctgatatcatatcttctgatacacgcataagagatggtgagattcttatatctaaatctaaaacatttgc |
437 |
Q |
| |
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| T |
36410828 |
ccttatctttttgcccttgttcttctgataccataactattcacaaacccataagagatggtgaacttctcatttctaaatctaaaacatttgc |
36410921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 437
Target Start/End: Original strand, 36416159 - 36416252
Alignment:
| Q |
344 |
ccttttctttttgttcctgttcttctgatatcatatcttctgatacacgcataagagatggtgagattcttatatctaaatctaaaacatttgc |
437 |
Q |
| |
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|||| |||||||| | ||||||||||||| |||| || | | | || ||||||||||||||| |||| || |||||||||||||||||||| |
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| T |
36416159 |
ccttatctttttgcccttgttcttctgataccataactattcacaaacccataagagatggtgaacttctcatttctaaatctaaaacatttgc |
36416252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 437
Target Start/End: Original strand, 36424994 - 36425087
Alignment:
| Q |
344 |
ccttttctttttgttcctgttcttctgatatcatatcttctgatacacgcataagagatggtgagattcttatatctaaatctaaaacatttgc |
437 |
Q |
| |
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|||| |||||||| | ||||||||||||| |||| || | | | || ||||||||||||||| |||| || |||||||||||||||||||| |
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| T |
36424994 |
ccttatctttttgcccttgttcttctgataccataactattcacaaacccataagagatggtgaacttctcatttctaaatctaaaacatttgc |
36425087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 123; Significance: 5e-63; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 192 - 437
Target Start/End: Complemental strand, 34712712 - 34712490
Alignment:
| Q |
192 |
ctattttcttcttttcataaagaggagcttaatggactctgctaaagctcatctctaccttgtcacaacccaaaatcttaaacacaacaagttgttatta |
291 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||| ||| ||||||||||||||| |||||||||||||| | |||||||||||||||||||| |
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|
| T |
34712712 |
ctattttcttcttctcataaagaggaacttaatggactctgcaaaaactcatctctaccttgccacaacccaaaatcattaacacaacaagttgttatta |
34712613 |
T |
|
| Q |
292 |
ttacataatactaataattggctacttaattatttgattctactccttcttgccttttctttttgttcctgttcttctgatatcatatcttctgatacac |
391 |
Q |
| |
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|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34712612 |
ttacataatactaacaattggctac--------ttgattctactccttcttgccttttctttttgttcctgt---------------tcttctgatacac |
34712536 |
T |
|
| Q |
392 |
gcataagagatggtgagattcttatatctaaatctaaaacatttgc |
437 |
Q |
| |
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|||||| ||||||||||||| ||||||||||||||||||| ||||| |
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| T |
34712535 |
gcataaaagatggtgagatttttatatctaaatctaaaacctttgc |
34712490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 278
Target Start/End: Original strand, 42772531 - 42772599
Alignment:
| Q |
210 |
aaagaggagcttaatggactctgctaaagctcatctctaccttgtcacaacccaaaatcttaaacacaa |
278 |
Q |
| |
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|||||||| || |||||||||||||||| ||||||||||||||||| |||||||| ||||||||| |
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| T |
42772531 |
aaagaggaactcaatggactctgctaaaaaatttctctaccttgtcacaatccaaaatcataaacacaa |
42772599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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