View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15681_low_5 (Length: 391)

Name: NF15681_low_5
Description: NF15681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15681_low_5
NF15681_low_5
[»] chr5 (24 HSPs)
chr5 (18-279)||(35969827-35970085)
chr5 (26-154)||(9211993-9212120)
chr5 (287-373)||(35969710-35969796)
chr5 (312-378)||(27884569-27884635)
chr5 (321-378)||(1664848-1664905)
chr5 (312-378)||(37376361-37376427)
chr5 (321-378)||(4808621-4808678)
chr5 (321-366)||(9189488-9189533)
chr5 (321-378)||(35152180-35152236)
chr5 (322-378)||(24052411-24052467)
chr5 (322-378)||(31024325-31024381)
chr5 (314-366)||(35086795-35086847)
chr5 (321-378)||(1665615-1665672)
chr5 (321-378)||(2320784-2320841)
chr5 (321-378)||(8893986-8894043)
chr5 (321-378)||(8894668-8894725)
chr5 (321-378)||(9188889-9188946)
chr5 (321-378)||(40567140-40567197)
chr5 (326-378)||(2643308-2643361)
chr5 (321-378)||(35151581-35151638)
chr5 (321-378)||(35988857-35988914)
chr5 (322-378)||(2320195-2320251)
chr5 (338-378)||(10091544-10091583)
chr5 (322-378)||(23912192-23912248)
[»] chr1 (21 HSPs)
chr1 (312-378)||(45915500-45915566)
chr1 (321-378)||(5567161-5567218)
chr1 (321-378)||(22506143-22506200)
chr1 (321-378)||(23351639-23351696)
chr1 (321-378)||(28649685-28649742)
chr1 (321-378)||(49057414-49057471)
chr1 (321-378)||(4062531-4062588)
chr1 (321-378)||(22506943-22507000)
chr1 (321-378)||(44598656-44598713)
chr1 (323-374)||(5567905-5567956)
chr1 (320-378)||(23551671-23551729)
chr1 (316-378)||(30984148-30984210)
chr1 (312-378)||(37388888-37388954)
chr1 (321-378)||(4061696-4061753)
chr1 (321-378)||(4953822-4953879)
chr1 (321-378)||(30983253-30983310)
chr1 (321-378)||(45916356-45916413)
chr1 (322-374)||(4029551-4029603)
chr1 (321-377)||(44870478-44870534)
chr1 (315-365)||(28650414-28650464)
chr1 (316-366)||(44870229-44870279)
[»] chr7 (11 HSPs)
chr7 (321-378)||(44372613-44372670)
chr7 (321-378)||(44381469-44381526)
chr7 (316-378)||(7945330-7945392)
chr7 (321-378)||(38086343-38086400)
chr7 (322-378)||(43210141-43210197)
chr7 (321-372)||(39459012-39459063)
chr7 (321-378)||(4706636-4706693)
chr7 (312-365)||(12778011-12778064)
chr7 (321-378)||(23966317-23966374)
chr7 (321-378)||(28305784-28305841)
chr7 (325-378)||(38085565-38085618)
[»] chr6 (15 HSPs)
chr6 (321-378)||(16706870-16706927)
chr6 (18-205)||(24695185-24695369)
chr6 (321-374)||(21634361-21634414)
chr6 (321-378)||(29846221-29846278)
chr6 (322-378)||(17413253-17413309)
chr6 (321-378)||(29843742-29843799)
chr6 (321-378)||(29844491-29844548)
chr6 (322-378)||(17416804-17416860)
chr6 (321-378)||(24051257-24051314)
chr6 (321-378)||(28302164-28302221)
chr6 (321-378)||(28509852-28509909)
chr6 (321-378)||(29979225-29979282)
chr6 (312-365)||(31509504-31509557)
chr6 (322-378)||(6160451-6160507)
chr6 (322-378)||(22353269-22353325)
[»] chr3 (25 HSPs)
chr3 (321-378)||(52935688-52935745)
chr3 (321-378)||(9175742-9175799)
chr3 (321-378)||(37737610-37737667)
chr3 (321-378)||(44527141-44527198)
chr3 (321-378)||(37921082-37921139)
chr3 (322-370)||(37921605-37921653)
chr3 (321-377)||(39451972-39452028)
chr3 (322-378)||(44527858-44527914)
chr3 (321-378)||(1984848-1984905)
chr3 (321-378)||(9598269-9598326)
chr3 (321-378)||(35126353-35126410)
chr3 (321-378)||(52936461-52936518)
chr3 (342-378)||(39452770-39452806)
chr3 (312-378)||(36132-36198)
chr3 (316-378)||(20289590-20289652)
chr3 (316-378)||(35325765-35325827)
chr3 (328-378)||(36431198-36431248)
chr3 (321-378)||(25165901-25165958)
chr3 (321-378)||(25166746-25166803)
chr3 (321-378)||(39618540-39618597)
chr3 (315-376)||(41780397-41780458)
chr3 (321-378)||(47721212-47721269)
chr3 (321-378)||(47721911-47721968)
chr3 (322-378)||(26052176-26052232)
chr3 (322-378)||(39617657-39617713)
[»] chr2 (13 HSPs)
chr2 (321-378)||(29359288-29359345)
chr2 (322-378)||(29360025-29360081)
chr2 (321-378)||(80611-80668)
chr2 (312-378)||(41916897-41916963)
chr2 (312-378)||(2237975-2238041)
chr2 (319-378)||(15272344-15272403)
chr2 (321-378)||(28916287-28916344)
chr2 (314-378)||(24559552-24559616)
chr2 (321-378)||(1907487-1907544)
chr2 (321-378)||(2238822-2238879)
chr2 (321-378)||(21716442-21716499)
chr2 (321-378)||(28917105-28917162)
chr2 (321-366)||(35421024-35421069)
[»] chr8 (17 HSPs)
chr8 (321-378)||(3808881-3808938)
chr8 (315-378)||(3809624-3809687)
chr8 (312-378)||(30328902-30328968)
chr8 (321-378)||(16472294-16472351)
chr8 (321-378)||(16476865-16476922)
chr8 (321-378)||(31617399-31617456)
chr8 (322-366)||(8977739-8977783)
chr8 (312-378)||(25211489-25211555)
chr8 (321-378)||(989661-989718)
chr8 (321-378)||(8391453-8391510)
chr8 (321-378)||(23154309-23154366)
chr8 (321-378)||(31618208-31618265)
chr8 (321-378)||(37586724-37586781)
chr8 (312-378)||(7824910-7824976)
chr8 (316-378)||(11761035-11761097)
chr8 (322-378)||(9898967-9899023)
chr8 (314-378)||(9899653-9899717)
[»] chr4 (23 HSPs)
chr4 (321-378)||(4900259-4900316)
chr4 (321-378)||(55593383-55593440)
chr4 (311-378)||(49864066-49864133)
chr4 (321-378)||(50064672-50064729)
chr4 (324-378)||(55592587-55592641)
chr4 (321-378)||(2034179-2034236)
chr4 (321-378)||(7401978-7402034)
chr4 (321-378)||(7402890-7402946)
chr4 (321-374)||(23171337-23171390)
chr4 (321-366)||(26413271-26413316)
chr4 (321-366)||(50064153-50064198)
chr4 (322-378)||(47848827-47848883)
chr4 (312-378)||(6242890-6242956)
chr4 (321-378)||(24251205-24251260)
chr4 (321-378)||(4901054-4901111)
chr4 (321-378)||(11969741-11969797)
chr4 (321-378)||(15807658-15807715)
chr4 (321-378)||(28695922-28695979)
chr4 (321-366)||(31970742-31970787)
chr4 (312-365)||(35859210-35859263)
chr4 (321-378)||(47864491-47864548)
chr4 (321-378)||(52502407-52502464)
chr4 (325-366)||(53778492-53778533)
[»] scaffold0090 (1 HSPs)
scaffold0090 (312-378)||(45672-45738)
[»] scaffold0518 (1 HSPs)
scaffold0518 (321-366)||(1082-1127)
[»] scaffold0237 (1 HSPs)
scaffold0237 (321-378)||(694-751)
[»] scaffold0903 (1 HSPs)
scaffold0903 (321-378)||(249-306)
[»] scaffold0765 (1 HSPs)
scaffold0765 (321-378)||(357-414)
[»] scaffold0141 (1 HSPs)
scaffold0141 (321-378)||(10308-10365)


Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 35970085 - 35969827
Alignment:
Q  18 atcaaaagaagacataatagcaaattttggctaagaagacaacggcttgattcgcaacatggcaaatatgaagnnnnnnnntctcaagtattgaaatttc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||    
T  35970085 atcaaaagaagacataatagcaaattttggctaagaagacaacggcttgattcgcaacatggcaaatatgaa---aaaaaatctcaagtattgaaatttc 35969989  T
Q  118 atgggattctttgcaatcttcagctctcgctcctaaataagagatcagtgttgggactcgttaatagcggcaatgagattaaatgagtattatactttta 217  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35969988 atgggagtctttgcaatcttcacctctcgctcctaaataagagattggtgttgggactcattaatagcggcaatgagattaaatgagtattatactttta 35969889  T
Q  218 agtttgagaaaaatagtagttcaactaatttgaatcaagagttgaaggagttcgaggttatg 279  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  35969888 agtttgagaaaaagagtagttcaactaatttgaatcaagagttgaaagagttcgaggttatg 35969827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 26 - 154
Target Start/End: Complemental strand, 9212120 - 9211993
Alignment:
Q  26 aagacataatagcaaattttggctaagaagacaacggcttgattcgcaacatggcaaatatgaagnnnnnnnntctc-aagtattgaaatttcatgggat 124  Q
    ||||||||||||||||||||| |||||||||| || |||||||| ||||||||||||||||| ||        |||| |||||||||||||| ||||||     
T  9212120 aagacataatagcaaattttg-ctaagaagacgacagcttgattggcaacatggcaaatatg-agagaaaaaatctcaaagtattgaaatttgatgggag 9212023  T
Q  125 tctttgcaatcttcagctctcgctcctaaa 154  Q
    |||||||||||||||||||| |||||||||    
T  9212022 tctttgcaatcttcagctcttgctcctaaa 9211993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 287 - 373
Target Start/End: Complemental strand, 35969796 - 35969710
Alignment:
Q  287 cttccttcttgttgacaaggacaaatatttttgccttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtcctt 373  Q
    |||| ||||||||||||||||||||||||||||  |||||||||||||   | | ||||||||||||||||||||||||| ||||||    
T  35969796 cttctttcttgttgacaaggacaaatatttttggtttaaatatgcaattatttcttgtaatttagacgcgttttgattttcgtcctt 35969710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 312 - 378
Target Start/End: Complemental strand, 27884635 - 27884569
Alignment:
Q  312 tatttttgccttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||| | ||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||    
T  27884635 tattttaggcttaaatatgcaatccgtcccagtaatttagacgcgttttgattttcgtccttataaa 27884569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 1664848 - 1664905
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||    
T  1664848 cttaaatatgcaatccatccctgtaatttagacgctttttgattttcgtccttgtaaa 1664905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 312 - 378
Target Start/End: Complemental strand, 37376427 - 37376361
Alignment:
Q  312 tatttttgccttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||| | ||||||||||||||||||||| ||||||| |||||||||||||||| |||||| ||||    
T  37376427 tattttaggcttaaatatgcaatccgtcccagtaatttggacgcgttttgattttcgtccttataaa 37376361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 4808678 - 4808621
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||||| ||||| |||||||| |||||||||||||||| |||||||||||    
T  4808678 cttaaatatgcaattcgtccttgtaatttggacgcgttttgattttcgtccttgtaaa 4808621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 321 - 366
Target Start/End: Complemental strand, 9189533 - 9189488
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttt 366  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||    
T  9189533 cttaaatatgcaatccgtctctgtaatttggacgcgttttgatttt 9189488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 35152236 - 35152180
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||||| |||||||||||||| ||| |||||||||||| |||||||||||    
T  35152236 cttaaatatgcaattcgtccctgtaattttgac-cgttttgattttcgtccttgtaaa 35152180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 24052467 - 24052411
Alignment:
Q  322 ttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||||  ||||||||||||| |||||||||||||||| |||| ||||||    
T  24052467 ttaaatatgcaatttgtccctgtaatttggacgcgttttgattttcgtccctgtaaa 24052411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 31024381 - 31024325
Alignment:
Q  322 ttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||| ||||||||||||||| | | | ||||||||||||||||||||||    
T  31024381 ttaaatatgcaaaccgtccctgtaatttgggctcattttgatttttgtccttgtaaa 31024325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 314 - 366
Target Start/End: Original strand, 35086795 - 35086847
Alignment:
Q  314 tttttgccttaaatatgcaatccgtccctgtaatttagacgcgttttgatttt 366  Q
    |||||| |||||||||||| || ||||||||||||| ||||||||||||||||    
T  35086795 tttttggcttaaatatgcattctgtccctgtaatttggacgcgttttgatttt 35086847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 1665672 - 1665615
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||||||  ||||| ||||||  ||||||||||||||| |||||||||||    
T  1665672 cttaaatatgcaatctatccctctaatttgtacgcgttttgattttcgtccttgtaaa 1665615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 2320841 - 2320784
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||||  |||||||||||||   |||||||||||||| |||||||||||    
T  2320841 cttaaatatgcaatttgtccctgtaatttgagcgcgttttgattttcgtccttgtaaa 2320784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 8893986 - 8894043
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||||| ||||||| ||||||  ||||||||| ||||| |||||||||||    
T  8893986 cttaaatatgcaattcgtccctctaatttgaacgcgtttttattttcgtccttgtaaa 8894043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 8894725 - 8894668
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||||| ||| ||||||||| ||||||||||| |||| ||| |||||||    
T  8894725 cttaaatatgcaatctgtctctgtaatttggacgcgttttggttttcgtctttgtaaa 8894668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 9188889 - 9188946
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||| |||||||| ||||||||| || ||||||||||||  |||||||||||    
T  9188889 cttaaatatgtaatccgtctctgtaatttggatgcgttttgatttccgtccttgtaaa 9188946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 40567140 - 40567197
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||||| |||| ||||||||| || ||||||||||||| || ||||||||    
T  40567140 cttaaatatgcaattcgtctctgtaatttggatgcgttttgattttcgttcttgtaaa 40567197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 378
Target Start/End: Complemental strand, 2643361 - 2643308
Alignment:
Q  326 atatgcaatccgtccctgtaattta-gacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||| | ||| ||||||||| |||||||||||||||| |||||||||||    
T  2643361 atatgcaattcctccatgtaatttaagacgcgttttgattttcgtccttgtaaa 2643308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 35151581 - 35151638
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||||  |||||||||||||   |||||||||||||| || ||||||||    
T  35151581 cttaaatatgcaatttgtccctgtaatttgagcgcgttttgattttcgttcttgtaaa 35151638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 35988857 - 35988914
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||| ||||||||||||||| | | | |||||||||| |||| ||||||    
T  35988857 cttaaatatgcaaaccgtccctgtaatttgggctcattttgattttcgtccctgtaaa 35988914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 2320195 - 2320251
Alignment:
Q  322 ttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||| | ||||| |||||||||| || ||||||||||| |||||| ||||    
T  2320195 ttaaatatgcatttcgtccatgtaatttaggcgtgttttgattttcgtccttataaa 2320251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 338 - 378
Target Start/End: Complemental strand, 10091583 - 10091544
Alignment:
Q  338 tccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||||||| |||||||| |||||||||||||||    
T  10091583 tccctgtaatttagacacgttttga-ttttgtccttgtaaa 10091544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 23912248 - 23912192
Alignment:
Q  322 ttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||| |||||||||||||||  |||| |||| ||||| |||| ||||||    
T  23912248 ttaaatatgcaaaccgtccctgtaatttgaacgcatttttattttcgtccctgtaaa 23912192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 312 - 378
Target Start/End: Original strand, 45915500 - 45915566
Alignment:
Q  312 tatttttgccttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||| | ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  45915500 tattttaggcttaaatatgcaatccgtccctgtaatttggacgcattttgatttttgtccttgtaaa 45915566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 5567161 - 5567218
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  5567161 cttaaatatgcaatctgtccctgtaatttggacgcgttttgatttttgtccttgtaaa 5567218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 22506143 - 22506200
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  22506143 cttaaatatgcaatccgtccctgtaatttggacgcgttttaatttttgtccttgtaaa 22506200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 23351696 - 23351639
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  23351696 cttaaatatgcaatccgtccctgtaatttggacgcgttttgattttcgtccttgtaaa 23351639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 28649685 - 28649742
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  28649685 cttaaatatgcaatccgtccctgtaatttggacgcgttttgattttcgtccttgtaaa 28649742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 49057414 - 49057471
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  49057414 cttaaatatgcaatccgtccctgtaatttggacgcgttttgattttcgtccttgtaaa 49057471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 4062588 - 4062531
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||    
T  4062588 cttaaatatgcaatccgtccctgtaatttgaacgcgttttgattttcgtccttgtaaa 4062531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 22507000 - 22506943
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||    
T  22507000 cttaaatatgcaatccgtccttgtaatttggacgcgttttgattttcgtccttgtaaa 22506943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 44598713 - 44598656
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||    
T  44598713 cttaaatatacaatccgtccctgtaatttggacgcgttttgattttcgtccttgtaaa 44598656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 323 - 374
Target Start/End: Complemental strand, 5567956 - 5567905
Alignment:
Q  323 taaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttg 374  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  5567956 taaatatgcaattcgtccctgtaatttagacgcgttttgattttcgtccttg 5567905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 320 - 378
Target Start/End: Original strand, 23551671 - 23551729
Alignment:
Q  320 ccttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||| |||||||||| |||||||||||||| |||||||||||||||| |||||||||||    
T  23551671 ccttcaatatgcaattcgtccctgtaatttggacgcgttttgattttcgtccttgtaaa 23551729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 30984210 - 30984148
Alignment:
Q  316 tttgccttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||| ||||||||||||||| ||||||||||||| |||||||||||||||| |||| ||||||    
T  30984210 tttggcttaaatatgcaatctgtccctgtaatttggacgcgttttgattttcgtccctgtaaa 30984148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 312 - 378
Target Start/End: Original strand, 37388888 - 37388954
Alignment:
Q  312 tatttttgccttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||| | ||||||||||||||||||||| ||||||| |||||||||||||||| |||||| ||||    
T  37388888 tattttaggcttaaatatgcaatccgtcccagtaatttggacgcgttttgattttcgtccttataaa 37388954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 4061696 - 4061753
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||||||||| ||||||||| |||||||||| ||||| |||||||||||    
T  4061696 cttaaatatgcaatccgtctctgtaatttggacgcgttttaattttcgtccttgtaaa 4061753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 4953822 - 4953879
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||||| |||| ||||||||| ||| |||||||||||| |||||||||||    
T  4953822 cttaaatatgcaattcgtctctgtaatttggacacgttttgattttcgtccttgtaaa 4953879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 30983253 - 30983310
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||||||||| ||| |||||| |||||||||||||||| |||| ||||||    
T  30983253 cttaaatatgcaatccgttcctataatttggacgcgttttgattttcgtccctgtaaa 30983310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 45916413 - 45916356
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||||| |||| || |||||| |||||||||||||||| |||||||||||    
T  45916413 cttaaatatgcaattcgtctctataatttggacgcgttttgattttcgtccttgtaaa 45916356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 4029551 - 4029603
Alignment:
Q  322 ttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttg 374  Q
    |||||||||||||||||||||||||||| |  ||||||||||||| |||||||    
T  4029551 ttaaatatgcaatccgtccctgtaatttgggtgcgttttgattttcgtccttg 4029603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 321 - 377
Target Start/End: Complemental strand, 44870534 - 44870478
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaa 377  Q
    ||||||||| ||| ||||||||||||||| ||||| |||||||||| ||||||||||    
T  44870534 cttaaatatacaaaccgtccctgtaatttggacgccttttgattttcgtccttgtaa 44870478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 28650464 - 28650414
Alignment:
Q  315 ttttgccttaaatatgcaatccgtccctgtaatttagacgcgttttgattt 365  Q
    ||||| |||||||||||||||| |||| |||||||  ||||||||||||||    
T  28650464 ttttggcttaaatatgcaatccatccccgtaatttgtacgcgttttgattt 28650414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 366
Target Start/End: Original strand, 44870229 - 44870279
Alignment:
Q  316 tttgccttaaatatgcaatccgtccctgtaatttagacgcgttttgatttt 366  Q
    |||| ||||||||||||| || |||||||||||| ||||| ||||||||||    
T  44870229 tttggcttaaatatgcaaaccatccctgtaatttggacgcattttgatttt 44870279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 44372670 - 44372613
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  44372670 cttaaatatgcaatccgtccctgtaatttggacgcgttttgattttcgtccttgtaaa 44372613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 44381526 - 44381469
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  44381526 cttaaatatgcaatccgtccctgtaatttggacgcgttttgattttcgtccttgtaaa 44381469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 316 - 378
Target Start/End: Original strand, 7945330 - 7945392
Alignment:
Q  316 tttgccttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||| |||||||||||||| |||||||||||||| ||| |||||||||||| |||||||||||    
T  7945330 tttggcttaaatatgcaattcgtccctgtaatttggacacgttttgattttcgtccttgtaaa 7945392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 38086400 - 38086343
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||||| ||||||| |||||| |||||||||||||||| |||||||||||    
T  38086400 cttaaatatgcaattcgtccctataatttggacgcgttttgattttcgtccttgtaaa 38086343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 43210141 - 43210197
Alignment:
Q  322 ttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||| |||||||||||||| | |||||||||||||  |||||||||||    
T  43210141 ttaaatatgcaattcgtccctgtaatttgggcgcgttttgatttccgtccttgtaaa 43210197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 39459012 - 39459063
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtcct 372  Q
    |||||||||||||||||||| |||||||| | || ||||||||||| |||||    
T  39459012 cttaaatatgcaatccgtccatgtaatttgggcgtgttttgattttcgtcct 39459063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 4706636 - 4706693
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||| ||||||||||||||| | ||  |||||||||| |||| ||||||    
T  4706636 cttaaatatgcaaaccgtccctgtaatttgggcggattttgattttcgtccctgtaaa 4706693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 365
Target Start/End: Original strand, 12778011 - 12778064
Alignment:
Q  312 tatttttgccttaaatatgcaatccgtccctgtaatttagacgcgttttgattt 365  Q
    |||||| | ||||||||||||||| ||||| | ||||| |||||||||||||||    
T  12778011 tattttaggcttaaatatgcaatctgtcccagaaatttggacgcgttttgattt 12778064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 23966317 - 23966374
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||| ||||||||||||||| | ||  |||||||||| |||| ||||||    
T  23966317 cttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgtaaa 23966374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 28305841 - 28305784
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||| |||||   |||||||| |||||||||||||||| ||| |||||||    
T  28305841 cttaaatatgcattccgtttttgtaatttggacgcgttttgattttcgtctttgtaaa 28305784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 378
Target Start/End: Original strand, 38085565 - 38085618
Alignment:
Q  325 aatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||||||| |||||||| || |  |||||||||| |||||||||||    
T  38085565 aatatgcaatccgtccttgtaatttggatgtcttttgattttcgtccttgtaaa 38085618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 16706927 - 16706870
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  16706927 cttaaatatacaatccgtccctgtaatttagacgcgttttgatttttgaccttgtaaa 16706870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 24695185 - 24695369
Alignment:
Q  18 atcaaaagaagacataatagcaaattttggctaagaagacaacggcttgattcgcaacatggcaaatatgaagnnnnnnnn-tctcaagtattgaaattt 116  Q
    ||||||||||||||||| ||||||||| | ||||||   ||| |||||||||||||||||||||||| |||||         ||| ||| |||||||||     
T  24695185 atcaaaagaagacataacagcaaatttag-ctaaga---caatggcttgattcgcaacatggcaaatctgaaggaaaaaaaatctaaagaattgaaatta 24695280  T
Q  117 catgggattctttgcaatcttcagctctcgctcctaaataagagatcag-tgttgggactcgttaatagcggcaatgagattaaatgagt 205  Q
     |||||| |||||  |||||| |||||| ||||||||| ||||| |  | |||||||||||||| ||||||||||||||| |||||||||    
T  24695281 gatgggagtctttt-aatctttagctcttgctcctaaaaaagagcttgggtgttgggactcgttgatagcggcaatgagaataaatgagt 24695369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 321 - 374
Target Start/End: Complemental strand, 21634414 - 21634361
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttg 374  Q
    |||||||||||||||||||||| |||||| |||||||||||||||| |||||||    
T  21634414 cttaaatatgcaatccgtccctataatttggacgcgttttgattttcgtccttg 21634361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 29846221 - 29846278
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||| ||||||||||||||||   |||||||||||||| |||||||||||    
T  29846221 cttaaatatgcattccgtccctgtaatttgagcgcgttttgattttcgtccttgtaaa 29846278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 17413253 - 17413309
Alignment:
Q  322 ttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||| ||||||||||| ||||||||  ||||||||||||||| |||||||||||    
T  17413253 ttaaataagcaatccgtccatgtaatttgaacgcgttttgattttcgtccttgtaaa 17413309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 29843742 - 29843799
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||| ||||||||||||||||   | |||||||||||| |||||||||||    
T  29843742 cttaaatatgcattccgtccctgtaatttgagctcgttttgattttcgtccttgtaaa 29843799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 29844548 - 29844491
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||||| ||||| | |||||| | |||||||||||||| |||||||||||    
T  29844548 cttaaatatgcaattcgtccttataatttgggcgcgttttgattttcgtccttgtaaa 29844491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 17416860 - 17416804
Alignment:
Q  322 ttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||||||| ||||||||||  |||| |||||||||| |||| ||||||    
T  17416860 ttaaatatgcaatccgtacctgtaatttgaacgcattttgattttcgtccatgtaaa 17416804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 24051257 - 24051314
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||| ||||||||||||||| | ||  |||||||||| |||| ||||||    
T  24051257 cttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgtaaa 24051314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 28302221 - 28302164
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||| ||||||||||||||| | |   |||||||||| |||||||||||    
T  28302221 cttaaatatgcaaaccgtccctgtaatttgggctgattttgattttcgtccttgtaaa 28302164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 28509852 - 28509909
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||| ||||||||||||||| | |   |||||||||| |||||||||||    
T  28509852 cttaaatatgcaaaccgtccctgtaatttgggctgattttgattttcgtccttgtaaa 28509909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 29979282 - 29979225
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||| ||||||||||||||| | ||  |||||||||| |||| ||||||    
T  29979282 cttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgtaaa 29979225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 365
Target Start/End: Original strand, 31509504 - 31509557
Alignment:
Q  312 tatttttgccttaaatatgcaatccgtccctgtaatttagacgcgttttgattt 365  Q
    |||||| | ||||||||||||||| ||||| | ||||| |||||||||||||||    
T  31509504 tattttaggcttaaatatgcaatctgtcccagaaatttggacgcgttttgattt 31509557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 6160507 - 6160451
Alignment:
Q  322 ttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||| | ||||||||||||| ||| | |||||||||| |||| ||||||    
T  6160507 ttaaatatgcaaactgtccctgtaatttggactcattttgattttcgtccctgtaaa 6160451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 22353325 - 22353269
Alignment:
Q  322 ttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||| |||||||||||||||   ||| |||||||||| |||| ||||||    
T  22353325 ttaaatatgcaaaccgtccctgtaatttgagcgcattttgattttcgtccctgtaaa 22353269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 52935688 - 52935745
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  52935688 cttaaatatgcaatccgtccctgtaatttcgacgcgttttgattttcgtccttgtaaa 52935745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 9175799 - 9175742
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||    
T  9175799 cttaaatatgcaatccgtccttgtaatttggacgcgttttgattttcgtccttgtaaa 9175742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 37737667 - 37737610
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||||  ||||||||||||| |||||||||||||||| |||||||||||    
T  37737667 cttaaatatgcaatttgtccctgtaatttggacgcgttttgattttcgtccttgtaaa 37737610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 44527141 - 44527198
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||||||||||| |||||||| |||||||||||||||| ||| |||||||    
T  44527141 cttaaatatgcaatccgtccttgtaatttggacgcgttttgattttcgtcattgtaaa 44527198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 37921082 - 37921139
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||| ||| |||||||||||||||| ||| |||||||||| |||||||||||    
T  37921082 cttaaatatgaaattcgtccctgtaatttaggcgcattttgattttcgtccttgtaaa 37921139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 322 - 370
Target Start/End: Complemental strand, 37921653 - 37921605
Alignment:
Q  322 ttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtc 370  Q
    ||||||||||||| ||||| ||||||||||||||||||| |||||||||    
T  37921653 ttaaatatgcaattcgtccatgtaatttagacgcgttttaatttttgtc 37921605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 321 - 377
Target Start/End: Original strand, 39451972 - 39452028
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaa 377  Q
    ||||||||||||||||||||||||||||| |||   |||||||||| ||||||||||    
T  39451972 cttaaatatgcaatccgtccctgtaatttggacaaattttgattttcgtccttgtaa 39452028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 44527914 - 44527858
Alignment:
Q  322 ttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||||||| || |||||||| |||| ||||||||||| |||||||||||    
T  44527914 ttaaatatgcaatccggccatgtaatttggacgtgttttgattttcgtccttgtaaa 44527858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 1984848 - 1984905
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||||| |||||||||||||| | | | |||||||||| |||||||||||    
T  1984848 cttaaatatgcaattcgtccctgtaatttgggcccattttgattttcgtccttgtaaa 1984905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 9598326 - 9598269
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||| || ||||||||||||| | ||||||||||||||  ||||||||||    
T  9598326 cttaaatatgcattctgtccctgtaatttgggcgcgttttgattttcatccttgtaaa 9598269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 35126353 - 35126410
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||||| |||| ||| ||||| | |||||||||||||||||| |||||||    
T  35126353 cttaaatatgcaattcgtcactgaaatttgggcgcgttttgatttttgtcattgtaaa 35126410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 52936518 - 52936461
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||| ||||||||  || ||||| |||||||||||||||| |||||||||||    
T  52936518 cttaaatatgtaatccgtcagtgcaatttggacgcgttttgattttcgtccttgtaaa 52936461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 378
Target Start/End: Complemental strand, 39452806 - 39452770
Alignment:
Q  342 tgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||||||||||||||| |||||||||||    
T  39452806 tgtaatttagacgcgttttgattttcgtccttgtaaa 39452770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 378
Target Start/End: Complemental strand, 36198 - 36132
Alignment:
Q  312 tatttttgccttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||| | |||||||||||||||||||||  |||||| ||| |||||| ||||| |||||| ||||    
T  36198 tattttaggcttaaatatgcaatccgtcccaataattttgacacgtttttattttcgtccttataaa 36132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 20289652 - 20289590
Alignment:
Q  316 tttgccttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||| ||||||||||||| ||||||||||||||| | | | |||||||||| |||| ||||||    
T  20289652 tttggcttaaatatgcaaaccgtccctgtaatttgggctcattttgattttcgtccctgtaaa 20289590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 35325827 - 35325765
Alignment:
Q  316 tttgccttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||| ||||||||||||| | ||||||||||||| | ||| |||||||||| |||| ||||||    
T  35325827 tttggcttaaatatgcaaactgtccctgtaatttgggcgcattttgattttcgtccctgtaaa 35325765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 328 - 378
Target Start/End: Original strand, 36431198 - 36431248
Alignment:
Q  328 atgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||| ||||| ||||||||||| ||||||||||||| |||||| ||||    
T  36431198 atgcaattcgtccttgtaatttagaggcgttttgattttcgtccttataaa 36431248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 25165901 - 25165958
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||| ||||||||||||||| | ||  |||||||||| |||| ||||||    
T  25165901 cttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgtaaa 25165958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 25166803 - 25166746
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||| ||||||||||||||| | ||  |||||||||| |||| ||||||    
T  25166803 cttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgtaaa 25166746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 39618597 - 39618540
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||||||| ||||  |||||| | |||||||| ||||| |||||||||||    
T  39618597 cttaaatatgcaatccatcccaataatttgggcgcgttttaattttcgtccttgtaaa 39618540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 376
Target Start/End: Complemental strand, 41780458 - 41780397
Alignment:
Q  315 ttttgccttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgta 376  Q
    ||||| ||||||||||   | |||||||||||||| ||| ||||||||||||||||| ||||    
T  41780458 ttttggcttaaatatgattttcgtccctgtaatttggacccgttttgatttttgtccctgta 41780397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 47721212 - 47721269
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||| |||| ||| ||||||||| ||| |||||| ||||| |||||||||||    
T  47721212 cttaaatatgtaatctgtctctgtaatttggacacgtttttattttcgtccttgtaaa 47721269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 47721968 - 47721911
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||||| |||||||||||||  | |||||||| ||||  ||||||||||    
T  47721968 cttaaatatgcaatcagtccctgtaatttgaatgcgttttggttttcttccttgtaaa 47721911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 26052232 - 26052176
Alignment:
Q  322 ttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||| ||||||||||||||| | | | |||||||||| |||| ||||||    
T  26052232 ttaaatatgcaaaccgtccctgtaatttgggctcattttgattttcgtccctgtaaa 26052176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 39617657 - 39617713
Alignment:
Q  322 ttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||| ||| ||||| |||||||| |||||||||||||| | |||||| ||||    
T  39617657 ttaaatatgtaattcgtccatgtaatttggacgcgttttgattatcgtccttataaa 39617713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 29359288 - 29359345
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  29359288 cttaaatatgcaatccgtccctgtaatttggacgcgttttgattttcgtccttgtaaa 29359345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 29360081 - 29360025
Alignment:
Q  322 ttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  29360081 ttaaatatgcaatctgtccctgtaatttagatgcgttttgatttttgtccttgtaaa 29360025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 80611 - 80668
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||    
T  80611 cttaaatatgcaatccatccctgtaatttggacgcgttttgattttcgtccttgtaaa 80668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 312 - 378
Target Start/End: Original strand, 41916897 - 41916963
Alignment:
Q  312 tatttttgccttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||| | ||||||||||||||||||||| ||||||| |||||||||||||||| |||||| ||||    
T  41916897 tattttaggcttaaatatgcaatccgtcccagtaatttggacgcgttttgattttcgtccttataaa 41916963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 312 - 378
Target Start/End: Original strand, 2237975 - 2238041
Alignment:
Q  312 tatttttgccttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||| || ||||||||||||| ||||||||||||||| ||||  |||||||||| |||||||||||    
T  2237975 tatttatggcttaaatatgcaaaccgtccctgtaatttggacgaattttgattttcgtccttgtaaa 2238041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 378
Target Start/End: Complemental strand, 15272403 - 15272344
Alignment:
Q  319 gccttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||||||| ||||  |||||||| |||||||||||| ||| |||||||||||    
T  15272403 gccttaaatatgcaattcgtctgtgtaatttggacgcgttttgagtttcgtccttgtaaa 15272344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 28916287 - 28916344
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||| ||||||||||||||| ||||  |||||||||| |||| ||||||    
T  28916287 cttaaatatgcaaaccgtccctgtaatttggacgaattttgattttcgtccctgtaaa 28916344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 378
Target Start/End: Complemental strand, 24559616 - 24559552
Alignment:
Q  314 tttttgccttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||| ||||||||||||| ||||||||||||||| | | | |||||||||| |||| ||||||    
T  24559616 tttttggcttaaatatgcaaaccgtccctgtaatttgggctcattttgattttcgtccctgtaaa 24559552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 1907544 - 1907487
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||||| ||| || ||||||  | ||||||||||||| |||||||||||    
T  1907544 cttaaatatgcaatctgtctctataatttgaatgcgttttgattttcgtccttgtaaa 1907487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 2238879 - 2238822
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||| ||||||||||||||| | ||  |||||||||| |||| ||||||    
T  2238879 cttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgtaaa 2238822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 21716442 - 21716499
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||| ||||||||||||||| | | | |||||||||| |||| ||||||    
T  21716442 cttaaatatgcaaaccgtccctgtaatttgggctcattttgattttcgtccctgtaaa 21716499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 28917162 - 28917105
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||| ||||||||||||||| | ||  |||||||||| |||| ||||||    
T  28917162 cttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgtaaa 28917105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 366
Target Start/End: Original strand, 35421024 - 35421069
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttt 366  Q
    |||||||||| |||| ||||||||||||| | ||||||||||||||    
T  35421024 cttaaatatgtaatctgtccctgtaatttggccgcgttttgatttt 35421069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 3808881 - 3808938
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||    
T  3808881 cttaaatatgcaatccgtccctgtaatttggacgcgttttgattttcgtctttgtaaa 3808938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 315 - 378
Target Start/End: Complemental strand, 3809687 - 3809624
Alignment:
Q  315 ttttgccttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||| |||||||||||||||||||| |||||| | |||||||||||||||| |||||||||||    
T  3809687 ttttggcttaaatatgcaatccgtccttgtaatatggacgcgttttgattttcgtccttgtaaa 3809624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 312 - 378
Target Start/End: Complemental strand, 30328968 - 30328902
Alignment:
Q  312 tatttttgccttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||| | ||||||||||||||||||||| ||||||| |||||||||||||||| |||||| ||||    
T  30328968 tattttaggcttaaatatgcaatccgtcccagtaatttggacgcgttttgattttcgtccttataaa 30328902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 16472294 - 16472351
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||||||||| | ||||||||||||||||||||||||| |||| ||||||    
T  16472294 cttaaatatgcaatccgttcttgtaatttagacgcgttttgattttcgtccctgtaaa 16472351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 16476865 - 16476922
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||||||||| | ||||||||||||||||||||||||| |||| ||||||    
T  16476865 cttaaatatgcaatccgttcttgtaatttagacgcgttttgattttcgtccctgtaaa 16476922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 31617399 - 31617456
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||||||||||| |||||||| || | ||||||||||| |||||||||||    
T  31617399 cttaaatatgcaatccgtccatgtaatttggatgagttttgattttggtccttgtaaa 31617456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 322 - 366
Target Start/End: Complemental strand, 8977783 - 8977739
Alignment:
Q  322 ttaaatatgcaatccgtccctgtaatttagacgcgttttgatttt 366  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||    
T  8977783 ttaaatatgcaatctgtccctgtaatttggacgcgttttgatttt 8977739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 378
Target Start/End: Original strand, 25211489 - 25211555
Alignment:
Q  312 tatttttgccttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||| | ||||||||||||||| ||||| ||||| | |||||||||||||||| |||||| ||||    
T  25211489 tattttaggcttaaatatgcaatctgtcccagtaatctcgacgcgttttgattttcgtccttataaa 25211555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 989661 - 989718
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||||| ||||  |||||||||| ||||||||||||||  ||||||||||    
T  989661 cttaaatatgcaattcgtctttgtaatttaggcgcgttttgattttcatccttgtaaa 989718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 8391510 - 8391453
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||| |||| |||  ||||||| |||||||||||||||| |||||||||||    
T  8391510 cttaaatatgctatccatccacgtaatttggacgcgttttgattttcgtccttgtaaa 8391453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 23154366 - 23154309
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||| ||||||||||||||| | ||| |||||||||| |||| ||||||    
T  23154366 cttaaatatgcaaaccgtccctgtaatttgggcgcattttgattttcgtccctgtaaa 23154309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 31618265 - 31618208
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||||| | ||||  |||||| |||||||||||||||| |||||||||||    
T  31618265 cttaaatatgcaattcatcccaataatttggacgcgttttgattttcgtccttgtaaa 31618208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 37586724 - 37586781
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||| ||||||||||||||||| | | |||||||||| |||| ||||||    
T  37586724 cttaaatatgcaaaccgtccctgtaatttaggctcattttgattttcgtccctgtaaa 37586781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 378
Target Start/End: Complemental strand, 7824976 - 7824910
Alignment:
Q  312 tatttttgccttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||| | ||| ||||| ||||| ||||| ||||||| |||||||||||||||| |||||| ||||    
T  7824976 tattttaggcttgaatatccaatctgtcccagtaatttggacgcgttttgattttcgtccttataaa 7824910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 378
Target Start/End: Original strand, 11761035 - 11761097
Alignment:
Q  316 tttgccttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||| ||||||||||||| ||||||||||||||| | | | |||||||||| |||| ||||||    
T  11761035 tttggcttaaatatgcaaaccgtccctgtaatttgggctcattttgattttcgtccctgtaaa 11761097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 9898967 - 9899023
Alignment:
Q  322 ttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||| ||||||||||||||| | | | |||||||||| |||| ||||||    
T  9898967 ttaaatatgcaaaccgtccctgtaatttgggctcattttgattttcgtccctgtaaa 9899023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 378
Target Start/End: Complemental strand, 9899717 - 9899653
Alignment:
Q  314 tttttgccttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||| ||||||||||||| | ||||||||||||| | | | |||||||||| |||| ||||||    
T  9899717 tttttggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgtaaa 9899653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 4900259 - 4900316
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||    
T  4900259 cttaaatatgcaatccgtccctgtaatttgggcgcgttttgattttcgtccttgtaaa 4900316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 55593440 - 55593383
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||    
T  55593440 cttaaatatgcaatccgtccctgtaatttggacgcgttttcattttcgtccttgtaaa 55593383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 311 - 378
Target Start/End: Complemental strand, 49864133 - 49864066
Alignment:
Q  311 atatttttgccttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||| |||||||||||||| |||||||||||||| || |||||||||||||  ||||||||||    
T  49864133 atatttttggcttaaatatgcaattcgtccctgtaatttggaagcgttttgattttcatccttgtaaa 49864066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 50064729 - 50064672
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||||| |||||||||||||| | |||||||||||||| |||||||||||    
T  50064729 cttaaatatgcaattcgtccctgtaatttgggcgcgttttgattttcgtccttgtaaa 50064672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 324 - 378
Target Start/End: Original strand, 55592587 - 55592641
Alignment:
Q  324 aaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||| ||||||||||||| |||| ||||||||||| |||||||||||    
T  55592587 aaatatgcaatctgtccctgtaatttggacgtgttttgattttcgtccttgtaaa 55592641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 2034179 - 2034236
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||||| ||||| |||||||||| |||||||||||||| | |||||||||    
T  2034179 cttaaatatgcaattcgtccatgtaatttaggcgcgttttgattttcgaccttgtaaa 2034236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 7401978 - 7402034
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||| |||| ||||||    
T  7401978 cttaaatatgcaatccgtccctg-aatttggacgcgttttgattttcgtccctgtaaa 7402034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 7402946 - 7402890
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||||||||||| |||||||| |||||||||||||||| |||| ||||||    
T  7402946 cttaaatatgcaatccgtcc-tgtaatttggacgcgttttgattttcgtccctgtaaa 7402890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 321 - 374
Target Start/End: Complemental strand, 23171390 - 23171337
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttg 374  Q
    |||||||||||||||| |||||||||||| || | |||||||||||||||||||    
T  23171390 cttaaatatgcaatccatccctgtaatttggatgagttttgatttttgtccttg 23171337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 321 - 366
Target Start/End: Complemental strand, 26413316 - 26413271
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttt 366  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||    
T  26413316 cttaaatatgcaatccgtccctgtaatttggacgcgttttaatttt 26413271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 321 - 366
Target Start/End: Original strand, 50064153 - 50064198
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttt 366  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||    
T  50064153 cttaaatatgcaattcgtccatgtaatttagacgcgttttgatttt 50064198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 47848883 - 47848827
Alignment:
Q  322 ttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||| ||||||||||||||| | ||| |||||||||| |||||||||||    
T  47848883 ttaaatatgcaaaccgtccctgtaatttgggcgcattttgattttcgtccttgtaaa 47848827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 378
Target Start/End: Complemental strand, 6242956 - 6242890
Alignment:
Q  312 tatttttgccttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||| | |||||||||||||||| |||  ||||||| |||||||||||||||| |||||| ||||    
T  6242956 tattttaggcttaaatatgcaatccatcctagtaatttggacgcgttttgattttcgtccttctaaa 6242890  T

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Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 24251260 - 24251205
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||||||||||||| |||||| |||||||||  ||||| |||||||||||    
T  24251260 cttaaatatgcaatccgtccctataatttggacgcgttt--attttcgtccttgtaaa 24251205  T

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Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 4901111 - 4901054
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||||| |||||||||||| |   |||||||||||||| |||||||||||    
T  4901111 cttaaatatgcaattcgtccctgtaatctgaccgcgttttgattttcgtccttgtaaa 4901054  T

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Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 11969741 - 11969797
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||||   |||||||||||| | ||||||||||||||||||||||||||    
T  11969741 cttaaatatgcaatttatccctgtaatttgg-cgcgttttgatttttgtccttgtaaa 11969797  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 15807658 - 15807715
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||| ||||||||||||||| | ||  |||||||||| |||| ||||||    
T  15807658 cttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgtaaa 15807715  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 28695922 - 28695979
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||| ||| ||||||||||||||   || ||||||||||| |||||||||||    
T  28695922 cttaaatatgtaattcgtccctgtaatttgagcgtgttttgattttcgtccttgtaaa 28695979  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 366
Target Start/End: Original strand, 31970742 - 31970787
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttt 366  Q
    |||||||||  ||||||||| ||||||||||| |||||||||||||    
T  31970742 cttaaatatataatccgtccttgtaatttagatgcgttttgatttt 31970787  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 365
Target Start/End: Complemental strand, 35859263 - 35859210
Alignment:
Q  312 tatttttgccttaaatatgcaatccgtccctgtaatttagacgcgttttgattt 365  Q
    |||||| | ||||||||||||||| ||||| | ||||| |||||||||||||||    
T  35859263 tattttaggcttaaatatgcaatctgtcccagaaatttggacgcgttttgattt 35859210  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 47864491 - 47864548
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||| ||||||||||||||| | ||  |||||||||| |||| ||||||    
T  47864491 cttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgtaaa 47864548  T

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Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 52502407 - 52502464
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||| ||||||||||||||| | | | |||||||||| |||| ||||||    
T  52502407 cttaaatatgcaaaccgtccctgtaatttgggctcattttgattttcgtccctgtaaa 52502464  T

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Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 366
Target Start/End: Original strand, 53778492 - 53778533
Alignment:
Q  325 aatatgcaatccgtccctgtaatttagacgcgttttgatttt 366  Q
    |||||||| | |||||||||||||| ||||||||||||||||    
T  53778492 aatatgcatttcgtccctgtaatttggacgcgttttgatttt 53778533  T

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Target: scaffold0090 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 312 - 378
Target Start/End: Original strand, 45672 - 45738
Alignment:
Q  312 tatttttgccttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||| | ||||||||||||||||||||| ||||||| |||||||||| ||||| |||||| ||||    
T  45672 tattttaggcttaaatatgcaatccgtcccagtaatttggacgcgttttaattttcgtccttataaa 45738  T

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Target: scaffold0518 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0518
Description:

Target: scaffold0518; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 366
Target Start/End: Original strand, 1082 - 1127
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttt 366  Q
    |||||||||||||| |||||||||||||| | ||||||||||||||    
T  1082 cttaaatatgcaattcgtccctgtaatttgggcgcgttttgatttt 1127  T

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Target: scaffold0237 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 751 - 694
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    |||||||||||||| ||||| | |||||| | |||||||||||||| |||||||||||    
T  751 cttaaatatgcaattcgtccttataatttgggcgcgttttgattttcgtccttgtaaa 694  T

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Target: scaffold0903 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0903
Description:

Target: scaffold0903; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 249 - 306
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||| ||| |||||| |||||||||||| | |||||||||| |||| ||||||    
T  249 cttaaatatacaaaccgtccttgtaatttagactcattttgattttcgtccctgtaaa 306  T

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Target: scaffold0765 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0765
Description:

Target: scaffold0765; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 414 - 357
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||| ||||||||||||||| | | | |||||||||| |||| ||||||    
T  414 cttaaatatgcaaaccgtccctgtaatttgggctcattttgattttcgtccctgtaaa 357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 10308 - 10365
Alignment:
Q  321 cttaaatatgcaatccgtccctgtaatttagacgcgttttgatttttgtccttgtaaa 378  Q
    ||||||||||||| ||||||||||||||| | ||  |||||||||| |||| ||||||    
T  10308 cttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgtaaa 10365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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