View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15681_low_9 (Length: 259)
Name: NF15681_low_9
Description: NF15681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15681_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 41795973 - 41796222
Alignment:
| Q |
1 |
tgatataaagaaccgaaacacattatcgaaaaggctcgaggaactggtattatagcttaggaattgttaggagtcatttcaaactcaggaaagcttcttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41795973 |
tgatataaagaaccgaaacacattatctaaaaggctcgaggaactggtattatagcttaggaattgttaggagtcatttcaaactcaggaaagcttcttg |
41796072 |
T |
|
| Q |
101 |
attcataaaactagttatagctaattaattagcatatctcaaaagttaaaactatggtatttctgcatataacaactgattgttagcatgtaacatatat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41796073 |
attcataaaactagttatagctaattaattagcatatctcaaaagttaaaactatgttatttctgcatataacaactgattgttagcatgtaacatatat |
41796172 |
T |
|
| Q |
201 |
aattacataaaccacttgaagttgaacgcacctgcaacgattagcctatg |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41796173 |
aattacataaaccacttgaagttgaacgcacctgcaacgattagcctatg |
41796222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University