View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15682_high_1_N (Length: 458)
Name: NF15682_high_1_N
Description: NF15682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15682_high_1_N |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 25 - 366
Target Start/End: Complemental strand, 4986154 - 4985817
Alignment:
| Q |
25 |
tgacacaagaatttagagctaataagagcaacaaataacaatgagcttacaatgagatggacatcaacatcatgcaaaaatatggtaagacacactaacc |
124 |
Q |
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| T |
4986154 |
tgacacaagaatttagagctaataagagcaacaaataacaatgtg-ttaaaatggg---gacattaacatcatgcaaaaatatggtaagacacactaacc |
4986059 |
T |
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| Q |
125 |
ttaaaaatgagactgttannnnnnnaaaccttttttatgacataacagttgccataatctcaaggaatctcacctacaaagttcattgtcaacagttagg |
224 |
Q |
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| T |
4986058 |
ttaaaaatgagactgttatttttttaaaccttttttatgacataacagttgccataatctcaaggaatctcaccgacaaagttcattgtcaacagttagg |
4985959 |
T |
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| Q |
225 |
tttgaaatttgattgagactttggagctcaaaattttcaactgtcggcaagtagtgtcctatatttacattaaaattacaagagtttgtgccgcaattta |
324 |
Q |
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| T |
4985958 |
tttgaaatttgattgagactttggagctcaaaattttctactttcggcaagtagtgtcctatatttacattaaaattacaagagtttgtgccgcaattta |
4985859 |
T |
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| Q |
325 |
aacaaattttgatacacaatcaagaataaaatatcttctcag |
366 |
Q |
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| T |
4985858 |
aacaaattttgatatacaatcaagaataaaatatcttctcag |
4985817 |
T |
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