View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15682_low_1 (Length: 605)
Name: NF15682_low_1
Description: NF15682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15682_low_1 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 585; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 1 - 605
Target Start/End: Complemental strand, 6316037 - 6315433
Alignment:
| Q |
1 |
tctgagtttctgtttaacatctgtcgtggctgctgttatttcatcagtttagtacccattgcgatctattgccgctgtgtttgttctgcttgcatattag |
100 |
Q |
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| T |
6316037 |
tctgagtttctgtttaacatctgtcgtggctgctgttatttcatcagtttagtacccattgcgatctattgccgctgtgtttgttctgcttgcatattag |
6315938 |
T |
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| Q |
101 |
gatcggatcaatgtgcagcattcatttgtaagcttaggtaggtgtggcgtgtgtgttaaataattggctttatttgatctgtaacattatagtacaagat |
200 |
Q |
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| T |
6315937 |
gatcggatcaatgtgcagcattcatttgtaagcttaggtaggtgtgccgtgtgtgttaaataattggctttatttgatctgtaacattatagtacaagat |
6315838 |
T |
|
| Q |
201 |
gcttgtgagttgtgaccaatactgtaatcttttttatcattggtatggttgtgatcataatgtaatgacaattcttcctttgcaaaagataacaatctaa |
300 |
Q |
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| T |
6315837 |
gcttgtgagttgtgaccaatactgtaatcttttttatcattggtatggttgtgatcataatgtaatgacaattcttcctttgcaaaagataacaatctaa |
6315738 |
T |
|
| Q |
301 |
tgacagttctagtatggaagtggtggatattcattgcgcttttcaaattttggttaccttgcaaacataaacgtttatttaaagtaacaaatccatatca |
400 |
Q |
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| T |
6315737 |
tgacagttctagtatggaagtggtggatattcattgcgcttttcaaattttggttaccttgcaaacataaacgtttatttaaagtaacaaatccatatca |
6315638 |
T |
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| Q |
401 |
tttcttcaataatcaaaggaattttgtgactagcagtaaatgggatactattactaaaggatgagcaacttgattggcttgcatccttataaaattaacc |
500 |
Q |
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| T |
6315637 |
tttcttcaataatcaaaggaattttgtgactagcagtaaatgagatacttttgctaacggatgagcaacttgattggcttgcatccttataaaattaacc |
6315538 |
T |
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| Q |
501 |
cttaagtttggttttacattaatacggcctctccattttgaaatcatggatctaaactcagttatagccaaaaactatgagccattgtattaacaaccaa |
600 |
Q |
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| T |
6315537 |
cttaagtttggttttacattaatacggcctctccattttgaaatcatggatctaaactcagttatagccaaaaactatgagccattgtattaacaaccaa |
6315438 |
T |
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| Q |
601 |
tttgc |
605 |
Q |
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| T |
6315437 |
tttgc |
6315433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 7e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 3 - 156
Target Start/End: Complemental strand, 55323518 - 55323357
Alignment:
| Q |
3 |
tgagtttctgtttaacatctgtcgtggctgct-gttatttcatcagtttagtacccattg-cgatctattgccgctgtgtttgttctgct-----tgcat |
95 |
Q |
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|||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||| |||| | ||||||||||||||| |||||| || || |
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| T |
55323518 |
tgagtttctgtttaacatctgttgtggcttattgttatttcatcagtttagtacccattgacgatgtgttgccgctgtgtttgctctgctgcatttgtat |
55323419 |
T |
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| Q |
96 |
attaggatcggatcaatgtgcagcattcatttgta-agcttaggtaggtgtggcgtgtgtgt |
156 |
Q |
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| T |
55323418 |
attaggacccgatcaatgtgcaacattcatttgtagtgcttaggtaggtgtgcggtgtgtgt |
55323357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 487 - 551
Target Start/End: Complemental strand, 26352201 - 26352137
Alignment:
| Q |
487 |
ttataaaattaacccttaagtttggttttacattaatacggcctctccattttgaaatcatggat |
551 |
Q |
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| T |
26352201 |
ttataaaattaaccctccagctgggttttacattaatatagtctctacattttaaaatcatggat |
26352137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 158 - 333
Target Start/End: Complemental strand, 51819827 - 51819641
Alignment:
| Q |
158 |
aaataattggctttatttgatctgtaacattatagtacaagatgcttgtgagttgtg----accaatactgtaatctttttt----atcattggtatggt |
249 |
Q |
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|||||||||||||| | ||||||||| || ||| |||||||||||||||||||||| || |||||| |||||||||| |||| ||||| ||| |
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| T |
51819827 |
aaataattggctttgtctgatctgtatcacaataatacaagatgcttgtgagttgtgtgtgactaatactacaatcttttttttttatcaatggtacggt |
51819728 |
T |
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| Q |
250 |
tgtgatcataatgtaatgacaattcttcctttgcaaaagataa---caatctaatgacagttctagtatggaagtggtggatattca |
333 |
Q |
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| T |
51819727 |
tgttatcataatgtaatgacaattcctcctttgaaaaatataatactaatctaaatacagttctagcatgaaagtggtggatattca |
51819641 |
T |
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