View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15683_high_3 (Length: 250)

Name: NF15683_high_3
Description: NF15683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15683_high_3
NF15683_high_3
[»] chr1 (3 HSPs)
chr1 (8-240)||(40635541-40635773)
chr1 (12-238)||(40629364-40629590)
chr1 (9-204)||(40656124-40656319)


Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 8 - 240
Target Start/End: Original strand, 40635541 - 40635773
Alignment:
Q  8 tggagaacaggaacaagagttgaaagaatgggcggagaagttgaaggatgttgctctagatgcaaagaatgtgatagaaacgttcgtcataaaatcagtc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40635541 tggagaacaggaacaagagttgaaagaatgggcggagaagttgaaggatgttgctctagatgcaaagaatgtgatagaaacgttcgtcatcaaatcagtc 40635640  T
Q  108 aagaggaggaggtggggtgttttgcattggtatgataaatacaaagttggaaaagagctggaggagatccgaaagaggatgagagacatctctcagaaaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40635641 aagaggaggaggtggggtgttttgcattggtatgataaatacaaagttggaaaagagctggaggagatccgaaagaggatgagagacatctctcagaaaa 40635740  T
Q  208 taatgaatttaaacttggatgttagtgtctctg 240  Q
    |||||||||||||||||||||||||||||||||    
T  40635741 taatgaatttaaacttggatgttagtgtctctg 40635773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 12 - 238
Target Start/End: Complemental strand, 40629590 - 40629364
Alignment:
Q  12 gaacaggaacaagagttgaaagaatgggcggagaagttgaaggatgttgctctagatgcaaagaatgtgatagaaacgttcgtcataaaatcagtcaaga 111  Q
    ||||||||||||| ||||  ||||||||| ||||||||||| ||||||||| | ||||||||| | |||||||| ||||| || ||||||||||| ||||    
T  40629590 gaacaggaacaagcgttgcgagaatgggcagagaagttgaaagatgttgctttggatgcaaaggacgtgatagatacgtttgtgataaaatcagtgaaga 40629491  T
Q  112 ggaggaggtggggtgttttgcattggtatgataaatacaaagttggaaaagagctggaggagatccgaaagaggatgagagacatctctcagaaaataat 211  Q
    ||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  40629490 ggaggaggtggggagttttgcattggtatgacaaatacaaggttggaaaagagctggagaagatccgaaagaggatgagagatatctctcagaaaataat 40629391  T
Q  212 gaatttaaacttggatgttagtgtctc 238  Q
    ||| ||||| |||||||||||| ||||    
T  40629390 gaacttaaatttggatgttagtatctc 40629364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 9 - 204
Target Start/End: Original strand, 40656124 - 40656319
Alignment:
Q  9 ggagaacaggaacaagagttgaaagaatgggcggagaagttgaaggatgttgctctagatgcaaagaatgtgatagaaacgttcgtcataaaatcagtca 108  Q
    |||||||| ||||||||||| || || ||||  |||||||||||||| ||||||   |||||| || |||||||||||||||| || || ||||| || |    
T  40656124 ggagaacaagaacaagagtttaatgagtgggaagagaagttgaaggaagttgctggtgatgcagaggatgtgatagaaacgtttgtgatcaaatcggtga 40656223  T
Q  109 agaggaggaggtggggtgttttgcattggtatgataaatacaaagttggaaaagagctggaggagatccgaaagaggatgagagacatctctcaga 204  Q
    | |||||||| ||||| ||| || |||||  ||| ||| |||| ||||| |||||| || || ||||||| | |||||||||||||||||||||||    
T  40656224 aaaggaggagatggggagttctgtattggattgacaaacacaaggttgggaaagagttgcagaagatccgcaggaggatgagagacatctctcaga 40656319  T

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