View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15683_low_1 (Length: 439)

Name: NF15683_low_1
Description: NF15683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15683_low_1
NF15683_low_1
[»] chr2 (6 HSPs)
chr2 (1-425)||(13375605-13376027)
chr2 (1-38)||(3100339-3100376)
chr2 (52-88)||(6075388-6075424)
chr2 (2-38)||(10818559-10818595)
chr2 (47-87)||(18181388-18181428)
chr2 (1-37)||(44534618-44534654)
[»] chr6 (1 HSPs)
chr6 (52-86)||(33109267-33109301)
[»] chr5 (2 HSPs)
chr5 (47-85)||(13716902-13716940)
chr5 (1-37)||(15814603-15814639)
[»] chr8 (2 HSPs)
chr8 (1-38)||(5391987-5392024)
chr8 (52-85)||(44790601-44790634)
[»] chr1 (1 HSPs)
chr1 (1-38)||(46536279-46536316)


Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 13375605 - 13376027
Alignment:
Q  1 gtattaaaaagtgaaatgactcagctattttgagacacnnnnnnncttcttcaaatagctccgttattatgggacggagggagtactaaacatcgttaac 100  Q
    ||||| |||||||||||||||||| ||||||||||||         || | |||||  |||| |||||||  ||||||||||||||||||||||||||||    
T  13375605 gtattgaaaagtgaaatgactcagttattttgagacattttt----ttttgcaaatgactccattattataagacggagggagtactaaacatcgttaac 13375700  T
Q  101 atatcctttaatcataatattgatagccaaacaaattatgtt--tgaaaatgagcacactcaaatatgttaagtcaacaccactaattcaacgaaaaatc 198  Q
    || | |||||||||||||||||||||||||| ||||||||||  | ||||||||||||||||||||| ||||||||| |||||||||||||| ||| |||    
T  13375701 atgttctttaatcataatattgatagccaaaaaaattatgttcttaaaaatgagcacactcaaatatcttaagtcaataccactaattcaacaaaagatc 13375800  T
Q  199 gaaaataaataggataattatttatatttcacaaccttgctggtgcaacattgtgcacccaaaagaaaataaatgtgctttgtcttacaaataccactac 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13375801 gaaaataaataggataattatttatatttcacaaccttgctggtgcaacattgtgcactcaaaagaaaataaatgtgctttgtcttacaaataccactac 13375900  T
Q  299 acaaataaagatttcatcaatttcttaaccaaaatatgagattatttggtatggaatgatcaaactatattaggacattgagcaaacacaaatttcataa 398  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13375901 acagataaagatttcatcaatttcttaaccaaaatatgagattatttggtatggaatgatcaaactatattaggacattgagcaaacacaaatttcataa 13376000  T
Q  399 actacaaaatcatccaacgaaagattg 425  Q
    |||||||||||||||||||||||||||    
T  13376001 actacaaaatcatccaacgaaagattg 13376027  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 3100376 - 3100339
Alignment:
Q  1 gtattaaaaagtgaaatgactcagctattttgagacac 38  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  3100376 gtattgaaaagtgaaatgactcagttattttgagacac 3100339  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 6075424 - 6075388
Alignment:
Q  52 caaatagctccgttattatgggacggagggagtacta 88  Q
    |||||||||| |||||||||| |||||||||||||||    
T  6075424 caaatagctcagttattatggaacggagggagtacta 6075388  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 10818595 - 10818559
Alignment:
Q  2 tattaaaaagtgaaatgactcagctattttgagacac 38  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  10818595 tattaaaaaatgaaatgactcagttattttgagacac 10818559  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 18181388 - 18181428
Alignment:
Q  47 ttcttcaaatagctccgttattatgggacggagggagtact 87  Q
    |||| |||| ||||| |||||||||||||||||||||||||    
T  18181388 ttctacaaaaagctcagttattatgggacggagggagtact 18181428  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 44534618 - 44534654
Alignment:
Q  1 gtattaaaaagtgaaatgactcagctattttgagaca 37  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  44534618 gtattgaaaagtgaaatgactcagttattttgagaca 44534654  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 33109301 - 33109267
Alignment:
Q  52 caaatagctccgttattatgggacggagggagtac 86  Q
    |||||||||| ||||||||||||||||||||||||    
T  33109301 caaatagctcagttattatgggacggagggagtac 33109267  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 85
Target Start/End: Complemental strand, 13716940 - 13716902
Alignment:
Q  47 ttcttcaaatagctccgttattatgggacggagggagta 85  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  13716940 ttcttcaaatgactccgttattatgggacggagggagta 13716902  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 15814639 - 15814603
Alignment:
Q  1 gtattaaaaagtgaaatgactcagctattttgagaca 37  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  15814639 gtattgaaaagtgaaatgactcagttattttgagaca 15814603  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 5392024 - 5391987
Alignment:
Q  1 gtattaaaaagtgaaatgactcagctattttgagacac 38  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  5392024 gtattgaaaagtgaaatgactcagttattttgagacac 5391987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 85
Target Start/End: Original strand, 44790601 - 44790634
Alignment:
Q  52 caaatagctccgttattatgggacggagggagta 85  Q
    |||||||||| |||||||||||||||||||||||    
T  44790601 caaatagctcagttattatgggacggagggagta 44790634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 46536316 - 46536279
Alignment:
Q  1 gtattaaaaagtgaaatgactcagctattttgagacac 38  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  46536316 gtattgaaaagtgaaatgactcagttattttgagacac 46536279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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