View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15683_low_2 (Length: 315)

Name: NF15683_low_2
Description: NF15683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15683_low_2
NF15683_low_2
[»] chr1 (15 HSPs)
chr1 (18-315)||(46160076-46160372)
chr1 (18-283)||(46166938-46167205)
chr1 (280-315)||(3549987-3550022)
chr1 (280-315)||(26834827-26834862)
chr1 (280-315)||(42709675-42709710)
chr1 (274-312)||(52688128-52688166)
chr1 (278-315)||(6920977-6921014)
chr1 (278-315)||(24589495-24589532)
chr1 (278-315)||(38238863-38238900)
chr1 (241-282)||(43112831-43112872)
chr1 (278-315)||(49251812-49251849)
chr1 (278-315)||(50942616-50942653)
chr1 (279-315)||(3552807-3552843)
chr1 (279-315)||(16436053-16436089)
chr1 (281-313)||(22172678-22172710)
[»] chr8 (6 HSPs)
chr8 (118-236)||(13023583-13023701)
chr8 (118-236)||(13070221-13070339)
chr8 (277-315)||(29938286-29938324)
chr8 (274-315)||(6796091-6796132)
chr8 (279-315)||(16872608-16872644)
chr8 (279-315)||(19715225-19715261)
[»] chr7 (6 HSPs)
chr7 (271-315)||(45780897-45780941)
chr7 (278-315)||(11910679-11910716)
chr7 (279-315)||(9818082-9818118)
chr7 (279-315)||(10720007-10720043)
chr7 (279-315)||(24924419-24924455)
chr7 (279-315)||(45823206-45823242)
[»] chr4 (5 HSPs)
chr4 (280-315)||(52920831-52920866)
chr4 (244-281)||(35734071-35734108)
chr4 (279-315)||(10555343-10555379)
chr4 (279-315)||(42507783-42507819)
chr4 (279-315)||(43587663-43587699)
[»] chr2 (4 HSPs)
chr2 (280-315)||(44710082-44710117)
chr2 (278-315)||(325379-325416)
chr2 (278-315)||(3628632-3628669)
chr2 (278-315)||(36443510-36443547)
[»] chr3 (8 HSPs)
chr3 (273-315)||(19961073-19961115)
chr3 (281-315)||(45674321-45674355)
chr3 (278-315)||(25904156-25904193)
chr3 (278-315)||(29651990-29652027)
chr3 (278-315)||(52060519-52060556)
chr3 (279-315)||(8108433-8108469)
chr3 (276-312)||(34817155-34817191)
chr3 (279-315)||(43599568-43599604)
[»] chr5 (4 HSPs)
chr5 (278-315)||(12360784-12360821)
chr5 (278-315)||(34163119-34163156)
chr5 (272-312)||(9248919-9248959)
chr5 (279-315)||(29619465-29619501)
[»] chr6 (1 HSPs)
chr6 (279-315)||(10364719-10364755)


Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 46160076 - 46160372
Alignment:
Q  18 gtttgtctataggaaagcaagtattgttttttcagatgacacgttgccggatggatatagtgtgaggaaaggtgatcatatttcattccatccatatgtc 117  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  46160076 gtttgtctataggaaagcaagtattgtttt-tcagatgacacgttgccggatggatatagtgtgaggaaaggtgattatatttcattccatccatatgtc 46160174  T
Q  118 atgggaaggatggagttcttgtggggtgaagatgctgagcaattcagaccagagagatggcttgatgaaaatggaaattttcagagagaaagccctttta 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46160175 atgggaaggatggagttcttgtggggtgaagatgctgagcaattcagaccagagagatggcttgatgaaaatggaaattttcagagagaaagccctttta 46160274  T
Q  218 agttcacagcctttcaggtatgaacaacttaattaggcgcttgtagcataattgcttatcatatactccccccatcccaaattgtatgtcactttaga 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||    
T  46160275 agttcacagcctttcaggtatgaacaacttaattaggcgcttgtagcataatcgcttatcatatactccctccatctcaaattgtatgtcactttaga 46160372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 46166938 - 46167205
Alignment:
Q  18 gtttgtctataggaaagcaagtattgttttttcagatgacacgttgccggatggatatagtgtgaggaaaggtgatcatatttcattccatccatatgtc 117  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||| | |||||||||| |||||||||    
T  46166938 gtttgtctataggaaagcaagtattgtttt-tcagatgacacgttgccggatggatatagtgttacgaaaggtgatcttgtttcattccaaccatatgtc 46167036  T
Q  118 atgggaaggatggagttcttgtggggtgaagatgctgagcaattcagaccagagagatggcttgatgaaaatggaaattttcagagagaaagccctttta 217  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  46167037 atgggaaggatgaagttcttgtggggtgaagatgctgagcaattcagaccagagagatggcttgatgaaaatggaaattttcaaagagagagccctttta 46167136  T
Q  218 agttcacagcctttcaggtatgaacaacttaattaggcgctt---gtagcataattgcttatcatatac 283  Q
    ||||||||||||| ||||||||||||||||||||||||||||   || ||||||| |||||||||||||    
T  46167137 agttcacagccttccaggtatgaacaacttaattaggcgcttgtcgtcgcataatcgcttatcatatac 46167205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 280 - 315
Target Start/End: Original strand, 3549987 - 3550022
Alignment:
Q  280 atactccccccatcccaaattgtatgtcactttaga 315  Q
    ||||||||||| ||||||||||||||||||||||||    
T  3549987 atactccccccgtcccaaattgtatgtcactttaga 3550022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 280 - 315
Target Start/End: Original strand, 26834827 - 26834862
Alignment:
Q  280 atactccccccatcccaaattgtatgtcactttaga 315  Q
    |||||||| |||||||||||||||||||||||||||    
T  26834827 atactccctccatcccaaattgtatgtcactttaga 26834862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 280 - 315
Target Start/End: Original strand, 42709675 - 42709710
Alignment:
Q  280 atactccccccatcccaaattgtatgtcactttaga 315  Q
    |||||||| |||||||||||||||||||||||||||    
T  42709675 atactccctccatcccaaattgtatgtcactttaga 42709710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 312
Target Start/End: Original strand, 52688128 - 52688166
Alignment:
Q  274 tatcatatactccccccatcccaaattgtatgtcacttt 312  Q
    |||||||||||||| ||||||||||||||||||| ||||    
T  52688128 tatcatatactccctccatcccaaattgtatgtcgcttt 52688166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 6921014 - 6920977
Alignment:
Q  278 atatactccccccatcccaaattgtatgtcactttaga 315  Q
    |||||||||| || ||||||||||||||||||||||||    
T  6921014 atatactccctccgtcccaaattgtatgtcactttaga 6920977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 24589495 - 24589532
Alignment:
Q  278 atatactccccccatcccaaattgtatgtcactttaga 315  Q
    |||||||||| || ||||||||||||||||||||||||    
T  24589495 atatactccctccgtcccaaattgtatgtcactttaga 24589532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 38238863 - 38238900
Alignment:
Q  278 atatactccccccatcccaaattgtatgtcactttaga 315  Q
    |||||||||| || ||||||||||||||||||||||||    
T  38238863 atatactccctccgtcccaaattgtatgtcactttaga 38238900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 43112831 - 43112872
Alignment:
Q  241 acaacttaattaggcgcttgtagcataattgcttatcatata 282  Q
    |||||||||||||  ||||||||||||| |||||||||||||    
T  43112831 acaacttaattagttgcttgtagcataaatgcttatcatata 43112872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 49251849 - 49251812
Alignment:
Q  278 atatactccccccatcccaaattgtatgtcactttaga 315  Q
    |||||||||| || ||||||||||||||||||||||||    
T  49251849 atatactccctccgtcccaaattgtatgtcactttaga 49251812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 50942616 - 50942653
Alignment:
Q  278 atatactccccccatcccaaattgtatgtcactttaga 315  Q
    |||||||||| || ||||||||||||||||||||||||    
T  50942616 atatactccctccgtcccaaattgtatgtcactttaga 50942653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 3552843 - 3552807
Alignment:
Q  279 tatactccccccatcccaaattgtatgtcactttaga 315  Q
    ||||||||| || ||||||||||||||||||||||||    
T  3552843 tatactccctccgtcccaaattgtatgtcactttaga 3552807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 16436053 - 16436089
Alignment:
Q  279 tatactccccccatcccaaattgtatgtcactttaga 315  Q
    ||||||||| || ||||||||||||||||||||||||    
T  16436053 tatactccctccgtcccaaattgtatgtcactttaga 16436089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 281 - 313
Target Start/End: Complemental strand, 22172710 - 22172678
Alignment:
Q  281 tactccccccatcccaaattgtatgtcacttta 313  Q
    ||||||| |||||||||||||||||||||||||    
T  22172710 tactccctccatcccaaattgtatgtcacttta 22172678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 13023583 - 13023701
Alignment:
Q  118 atgggaaggatggagttcttgtggggtgaagatgctgagcaattcagaccagagagatggcttgatgaaaatggaaattttcagagagaaagccctttta 217  Q
    ||||| |||||| | ||| | |||||||| ||||| ||| |||| ||||| || |||||||||||||||||||||| |||||||  |||| ||||||| |    
T  13023583 atggggaggatgaaattcatatggggtgatgatgcagaggaatttagacctgaaagatggcttgatgaaaatggaatttttcagccagaatgccctttca 13023682  T
Q  218 agttcacagcctttcaggt 236  Q
    |||| || || ||||||||    
T  13023683 agtttacggcttttcaggt 13023701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 236
Target Start/End: Complemental strand, 13070339 - 13070221
Alignment:
Q  118 atgggaaggatggagttcttgtggggtgaagatgctgagcaattcagaccagagagatggcttgatgaaaatggaaattttcagagagaaagccctttta 217  Q
    ||||| |||||| | ||| | |||||||| ||||| ||| |||| ||||| |  |||||||| ||||||||||| |||||||||  ||| | |||||| |    
T  13070339 atggggaggatgaaattcatatggggtgatgatgcagaggaatttagacctgcaagatggctggatgaaaatggcaattttcaggcagagaaccctttca 13070240  T
Q  218 agttcacagcctttcaggt 236  Q
    |||| || || ||||||||    
T  13070239 agtttactgcttttcaggt 13070221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 315
Target Start/End: Original strand, 29938286 - 29938324
Alignment:
Q  277 catatactccccccatcccaaattgtatgtcactttaga 315  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  29938286 catatactccctccgtcccaaattgtatgtcactttaga 29938324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 315
Target Start/End: Original strand, 6796091 - 6796132
Alignment:
Q  274 tatcatatactccccccatcccaaattgtatgtcactttaga 315  Q
    |||||| || |||| |||||||||||||||||||||||||||    
T  6796091 tatcatttattccctccatcccaaattgtatgtcactttaga 6796132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 16872644 - 16872608
Alignment:
Q  279 tatactccccccatcccaaattgtatgtcactttaga 315  Q
    ||||||||| || ||||||||||||||||||||||||    
T  16872644 tatactccctccgtcccaaattgtatgtcactttaga 16872608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 19715225 - 19715261
Alignment:
Q  279 tatactccccccatcccaaattgtatgtcactttaga 315  Q
    ||||||||| || ||||||||||||||||||||||||    
T  19715225 tatactccctccgtcccaaattgtatgtcactttaga 19715261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 45780941 - 45780897
Alignment:
Q  271 gcttatcatatactccccccatcccaaattgtatgtcactttaga 315  Q
    ||||||||||||||||| || ||||||||||||||||||||||||    
T  45780941 gcttatcatatactccctccgtcccaaattgtatgtcactttaga 45780897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 11910716 - 11910679
Alignment:
Q  278 atatactccccccatcccaaattgtatgtcactttaga 315  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  11910716 atatactccccccgtcccaaattgtatgtcactttaga 11910679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 9818082 - 9818118
Alignment:
Q  279 tatactccccccatcccaaattgtatgtcactttaga 315  Q
    ||||||||| || ||||||||||||||||||||||||    
T  9818082 tatactccctccgtcccaaattgtatgtcactttaga 9818118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 10720007 - 10720043
Alignment:
Q  279 tatactccccccatcccaaattgtatgtcactttaga 315  Q
    ||||||||| || ||||||||||||||||||||||||    
T  10720007 tatactccctccgtcccaaattgtatgtcactttaga 10720043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 24924455 - 24924419
Alignment:
Q  279 tatactccccccatcccaaattgtatgtcactttaga 315  Q
    ||||||||| || ||||||||||||||||||||||||    
T  24924455 tatactccctccgtcccaaattgtatgtcactttaga 24924419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 45823242 - 45823206
Alignment:
Q  279 tatactccccccatcccaaattgtatgtcactttaga 315  Q
    ||||||||| || ||||||||||||||||||||||||    
T  45823242 tatactccctccgtcccaaattgtatgtcactttaga 45823206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 280 - 315
Target Start/End: Complemental strand, 52920866 - 52920831
Alignment:
Q  280 atactccccccatcccaaattgtatgtcactttaga 315  Q
    |||||||| |||||||||||||||||||||||||||    
T  52920866 atactccctccatcccaaattgtatgtcactttaga 52920831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 281
Target Start/End: Original strand, 35734071 - 35734108
Alignment:
Q  244 acttaattaggcgcttgtagcataattgcttatcatat 281  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  35734071 acttaattaagcgcttgtagcataagtgcttatcatat 35734108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 10555379 - 10555343
Alignment:
Q  279 tatactccccccatcccaaattgtatgtcactttaga 315  Q
    ||||||||| || ||||||||||||||||||||||||    
T  10555379 tatactccctccgtcccaaattgtatgtcactttaga 10555343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 42507819 - 42507783
Alignment:
Q  279 tatactccccccatcccaaattgtatgtcactttaga 315  Q
    ||||||||| || ||||||||||||||||||||||||    
T  42507819 tatactccctccgtcccaaattgtatgtcactttaga 42507783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 43587663 - 43587699
Alignment:
Q  279 tatactccccccatcccaaattgtatgtcactttaga 315  Q
    ||||||||  |||||||||||||||||||||||||||    
T  43587663 tatactccttccatcccaaattgtatgtcactttaga 43587699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 280 - 315
Target Start/End: Complemental strand, 44710117 - 44710082
Alignment:
Q  280 atactccccccatcccaaattgtatgtcactttaga 315  Q
    |||||||| |||||||||||||||||||||||||||    
T  44710117 atactccctccatcccaaattgtatgtcactttaga 44710082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 325416 - 325379
Alignment:
Q  278 atatactccccccatcccaaattgtatgtcactttaga 315  Q
    |||||||||| || ||||||||||||||||||||||||    
T  325416 atatactccctccgtcccaaattgtatgtcactttaga 325379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 3628669 - 3628632
Alignment:
Q  278 atatactccccccatcccaaattgtatgtcactttaga 315  Q
    |||||||||| || ||||||||||||||||||||||||    
T  3628669 atatactccctccgtcccaaattgtatgtcactttaga 3628632  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 36443510 - 36443547
Alignment:
Q  278 atatactccccccatcccaaattgtatgtcactttaga 315  Q
    |||||||||| || ||||||||||||||||||||||||    
T  36443510 atatactccctccgtcccaaattgtatgtcactttaga 36443547  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 315
Target Start/End: Complemental strand, 19961115 - 19961073
Alignment:
Q  273 ttatcatatactccccccatcccaaattgtatgtcactttaga 315  Q
    |||| |||||||||| || ||||||||||||||||||||||||    
T  19961115 ttatgatatactccctccgtcccaaattgtatgtcactttaga 19961073  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 315
Target Start/End: Complemental strand, 45674355 - 45674321
Alignment:
Q  281 tactccccccatcccaaattgtatgtcactttaga 315  Q
    ||||||| |||||||||||||||||||||||||||    
T  45674355 tactccctccatcccaaattgtatgtcactttaga 45674321  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 25904193 - 25904156
Alignment:
Q  278 atatactccccccatcccaaattgtatgtcactttaga 315  Q
    |||||||||| || ||||||||||||||||||||||||    
T  25904193 atatactccctccgtcccaaattgtatgtcactttaga 25904156  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 29651990 - 29652027
Alignment:
Q  278 atatactccccccatcccaaattgtatgtcactttaga 315  Q
    |||||||||| || ||||||||||||||||||||||||    
T  29651990 atatactccctccgtcccaaattgtatgtcactttaga 29652027  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 52060556 - 52060519
Alignment:
Q  278 atatactccccccatcccaaattgtatgtcactttaga 315  Q
    |||||||||| || ||||||||||||||||||||||||    
T  52060556 atatactccctccgtcccaaattgtatgtcactttaga 52060519  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 8108433 - 8108469
Alignment:
Q  279 tatactccccccatcccaaattgtatgtcactttaga 315  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  8108433 tatactccctccatcccaaaatgtatgtcactttaga 8108469  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 34817191 - 34817155
Alignment:
Q  276 tcatatactccccccatcccaaattgtatgtcacttt 312  Q
    |||||||||||| || |||||||||||||||||||||    
T  34817191 tcatatactccctccgtcccaaattgtatgtcacttt 34817155  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 43599568 - 43599604
Alignment:
Q  279 tatactccccccatcccaaattgtatgtcactttaga 315  Q
    ||||||||| || ||||||||||||||||||||||||    
T  43599568 tatactccctccgtcccaaattgtatgtcactttaga 43599604  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 12360784 - 12360821
Alignment:
Q  278 atatactccccccatcccaaattgtatgtcactttaga 315  Q
    |||||||||| || ||||||||||||||||||||||||    
T  12360784 atatactccctccgtcccaaattgtatgtcactttaga 12360821  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 34163119 - 34163156
Alignment:
Q  278 atatactccccccatcccaaattgtatgtcactttaga 315  Q
    |||||||||| || ||||||||||||||||||||||||    
T  34163119 atatactccctccgtcccaaattgtatgtcactttaga 34163156  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 9248919 - 9248959
Alignment:
Q  272 cttatcatatactccccccatcccaaattgtatgtcacttt 312  Q
    |||||||||||||||| || |||||||||||||||| ||||    
T  9248919 cttatcatatactccctccgtcccaaattgtatgtcgcttt 9248959  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 29619501 - 29619465
Alignment:
Q  279 tatactccccccatcccaaattgtatgtcactttaga 315  Q
    ||||||||| || ||||||||||||||||||||||||    
T  29619501 tatactccctccgtcccaaattgtatgtcactttaga 29619465  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 10364755 - 10364719
Alignment:
Q  279 tatactccccccatcccaaattgtatgtcactttaga 315  Q
    ||||||||| || ||||||||||||||||||||||||    
T  10364755 tatactccctccgtcccaaattgtatgtcactttaga 10364719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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