View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15684_high_10 (Length: 310)

Name: NF15684_high_10
Description: NF15684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15684_high_10
NF15684_high_10
[»] chr1 (1 HSPs)
chr1 (1-293)||(29673145-29673437)


Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 29673437 - 29673145
Alignment:
Q  1 tatgcatttaataattaatttgcttaaagttcattggaaggattatatacacaatgaccattgacatccacaaagctagaaaattctaagttagactttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29673437 tatgcatttaataattaatttgcttaaagttcattggaaggattatatacacaatgaccattgacatccacaaagctagaaaattctaagttagactttc 29673338  T
Q  101 ttgcttcatagttcatactactcgtcaaccaattttgtttgcttctctacgtttctctgaccatggaaagctaaccagcttctaagaatccataatattt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29673337 ttgcttcatagttcatactactcgtcaaccaattttgtttgcttctctacgtttctctgaccatggaaagctaaccagcttctaagaatccataatattt 29673238  T
Q  201 aagaccaccatatatcacttattttgacgtccattcccaactatggagataaaaataactactgcaaatctagaagatgacacaataaaaaca 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29673237 aagaccaccatatatcacttattttgacgtccattcccaactatggagataaaaataactactgcaaatctagaagatgacacaataaaaaca 29673145  T

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