View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15684_high_14 (Length: 249)

Name: NF15684_high_14
Description: NF15684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15684_high_14
NF15684_high_14
[»] chr2 (2 HSPs)
chr2 (23-121)||(44650970-44651068)
chr2 (188-249)||(44651137-44651198)
[»] chr4 (1 HSPs)
chr4 (24-76)||(14523649-14523701)


Alignment Details
Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 44650970 - 44651068
Alignment:
Q  23 cagagattgtacggctaagatctgttacagcatcttgctgtaacagcgttgaatccagatccgtaatagtgtcattactaatccttttgtcagcaaaag 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44650970 cagagattgtacggctaagatctgttacagcatcttgctgtaacagcgttgaatccagatcagtaatagtgtcattactaatccttttgtcagcaaaag 44651068  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 44651137 - 44651198
Alignment:
Q  188 actgcatagaactttcaatcttagtgaggaataattaacagagacaataaaataaatggaaa 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  44651137 actgcatagaactttcaatcttagtgaggaataattaacagagaccataaaataaatggaaa 44651198  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 14523649 - 14523701
Alignment:
Q  24 agagattgtacggctaagatctgttacagcatcttgctgtaacagcgttgaat 76  Q
    |||||||||||||||||||||||||| |||||| |||||||| ||||||||||    
T  14523649 agagattgtacggctaagatctgttaaagcatcctgctgtaagagcgttgaat 14523701  T

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