View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15684_high_15 (Length: 238)
Name: NF15684_high_15
Description: NF15684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15684_high_15 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 33420573 - 33420352
Alignment:
| Q |
17 |
actaagctacacaaaatattcctacgagtttgtttccgttacacatgacaaacttcatttcaatcaatcatccactcatttgatgaccgaaaattcagaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
33420573 |
actaagctacacaaaatattcctacgagtttgtttccgttacacatgacaaacttcatttcaatcaatcgtccactcatttgatgactgaaaattcagaa |
33420474 |
T |
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| Q |
117 |
actatacggtacaaattagtttcagagttggatgaagaaacctgcaaaagcatgtcggtctcagtcactgttggagttaaaaaccatggaaacattgtag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33420473 |
actatacggtacaaattagtttcagagttggatgaagaaacctgcaaaagcatgtcggtctcagtcactgttggagttaaaaaccatggaaacattgtag |
33420374 |
T |
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| Q |
217 |
ggaggcaccctatattgctgtt |
238 |
Q |
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|||||||||||||||||||||| |
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| T |
33420373 |
ggaggcaccctatattgctgtt |
33420352 |
T |
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