View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15684_high_2 (Length: 722)
Name: NF15684_high_2
Description: NF15684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15684_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 589; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 1 - 695
Target Start/End: Original strand, 53592084 - 53592777
Alignment:
| Q |
1 |
agacgaaaataaagacaacaaaccgtcggataaccaaaagagaagacatctgccagcgaaaccgctgcaacacaaagtcatcacaaacaagacccaagcc |
100 |
Q |
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| T |
53592084 |
agacgaaaataaagacaacaaaccgtcggataaccaaaagagaagacatctgccagcgaaaccgcagcaacacaaagtcatcacaaacaggacccaagac |
53592183 |
T |
|
| Q |
101 |
gacggcggtgcagaggtcactggagactcagtagctccgatgaagagaaacaacgacccacatatttgagaacagatcgaggggttgtcgcagatccaaa |
200 |
Q |
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| T |
53592184 |
gacggcggcgcagaggtcaccggagactcagtagctccgattaggagaaacaacgacccacatatttgagaacagatcgaggggttgtcgcagatccaaa |
53592283 |
T |
|
| Q |
201 |
aagcatcaccggcgagagcacagacggccccagctacccaacggaacaaggagcgagggtggtgaagcggcgaggagcgcgttcaccacctgcgtgagac |
300 |
Q |
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| T |
53592284 |
aagcatcaccgacgagagcacagacggcgccggctacccaacagaacaaggagcgagggtggtgaagcggcgaggagcgcgttcaccacttgcgtcaggc |
53592383 |
T |
|
| Q |
301 |
tacatgatggaaaacgtgtttggattgcaggaggagaggtgagtggttatggaggttgttggcggcggctagggtagcaggagagagaacatagcgattt |
400 |
Q |
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| T |
53592384 |
tacatgatggaaaatgtgtttggattgcaggaggagaggtgagtggttatggaggttgttggcggcggctagggtagcaggagagagaacatagcgattt |
53592483 |
T |
|
| Q |
401 |
cacctatctgtcccaaacccaactacttgaagagaacagcaatgcaagtaaggttgtatcgcgtgtttcctatatgcttccttctaaaagataatatcaa |
500 |
Q |
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| T |
53592484 |
cacctatctgtcccaaacccaactacttgaagagaacaacaatgcaagtaaggttgtatcgcgtgtttcctatatgcttccttc--aaagataaaatcaa |
53592581 |
T |
|
| Q |
501 |
acaaacatctttcttcttgtcatctactttttccaatttcctgcaaacaataaaaattggattgatcacttacaagttacaacaaacaaaagtatatcaa |
600 |
Q |
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| T |
53592582 |
acaaacatctttcttattgtcatctactttttccaatttcctgcaaacaataaaaattggattgatcacttacaagttacaacaaacaaaagtacatcaa |
53592681 |
T |
|
| Q |
601 |
gagtagttgggttgg-gatcctatgcttctctttacaaagaagaatgcaccaataaaaggggcccgtgagaatttcaaaactcattcttaatttct |
695 |
Q |
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| T |
53592682 |
gagtagttaggttggacatcctatgcttctctttacaaagaagaatgcaccaataaaagggggccgtgagaatttcaaaactcattcttaatttct |
53592777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 151; Significance: 2e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 187 - 373
Target Start/End: Complemental strand, 23779566 - 23779380
Alignment:
| Q |
187 |
gtcgcagatccaaaaagcatcaccggcgagagcacagacggccccagctacccaacggaacaaggagcgagggtggtgaagcggcgaggagcgcgttcac |
286 |
Q |
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||||||||||||||||||||||||| |||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23779566 |
gtcgcagatccaaaaagcatcaccgacgagagcacatacggcgccggctacccaacggaacaaggagcgagggtggtgaagcggcgaggagcgcgttcac |
23779467 |
T |
|
| Q |
287 |
cacctgcgtgagactacatgatggaaaacgtgtttggattgcaggaggagaggtgagtggttatggaggttgttggcggcggctagg |
373 |
Q |
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| T |
23779466 |
cacctgcgtgaggctacatgatgaaaaacgtgtttggattggaggaggagaggtgagtggttatggaggttgtcggtggcggctagg |
23779380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 3 - 201
Target Start/End: Complemental strand, 23779770 - 23779594
Alignment:
| Q |
3 |
acgaaaataaagacaacaaaccgtcggataaccaaaagagaagacatctgccagcgaaaccgctgcaacacaaagtcatcacaaacaagacccaagccga |
102 |
Q |
| |
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| T |
23779770 |
acgaaaataaagactacaaactgtcggataaccaaaagagaagatatctgccagcgaaaccgcagcaacaca-------gacaaacatgacccaagtcga |
23779678 |
T |
|
| Q |
103 |
cggcggtgcagaggtcactggagactcagtagctccgatgaagagaaacaacgacccacatatttgagaacagatcgaggggttgtcgcagatccaaaa |
201 |
Q |
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| T |
23779677 |
cggcggcgcagaggtcaccggaaactcagtag---------------acaacgtcctacgaatttgagaacagatcgaggggttgtcgcagatccaaaa |
23779594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 1953898 - 1953853
Alignment:
| Q |
17 |
aacaaaccgtcggataaccaaaagagaagacatctgccagcgaaac |
62 |
Q |
| |
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|||||||||| ||||||| ||||||||||||| | ||||||||||| |
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| T |
1953898 |
aacaaaccgttggataacaaaaagagaagacacccgccagcgaaac |
1953853 |
T |
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